RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 MDC1Q14676 2089 aaKnown RBP10.09□□□□□ -0.79
COL4A6-209ENST00000545689 CD5LO43866 347 aa10.09□□□□□ -0.79
COL4A6-209ENST00000545689 CD33P20138 364 aa10.09□□□□□ -0.79
COL4A6-209ENST00000545689 SAA4P35542 130 aa10.09□□□□□ -0.79
COL4A6-209ENST00000545689 hDV102S1A0JD36 115 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 MLANAQ16655 118 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 TMEM86BQ8N661 226 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 SIGMAR1Q99720 223 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 AHCTF1Q8WYP5 2266 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 TRAV8-4A0A0B4J246 113 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 RHPN1-AS1Q9BWJ2 59 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 TRAV8-1A0A0A6YYK1 113 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 INSP01308 110 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 KRTAP27-1Q3LI81 207 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 C18orf32Q8TCD1 76 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 CSTL1Q9H114 145 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 IGHV4-39P01824 125 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 MEGF9Q9H1U4 602 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 ZNF503-AS2A6NEH8 195 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 A6NNC1 897 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 H3BRN7 92 aa10.08□□□□□ -0.8
COL4A6-209ENST00000545689 GNLYP22749 145 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 LOXP28300 417 aaPredicted RBP10.07□□□□□ -0.8
COL4A6-209ENST00000545689 ZNF876PQ49A33 203 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 AMN1Q8IY45 258 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 V9GYV3 84 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 WIPF3A6NGB9 483 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 C1QTNF4Q9BXJ3 329 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 A8MWP6 167 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 SRD5A1P18405 259 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 TDGF1P3P51864 188 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 OVOL2Q9BRP0 275 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 TNFRSF6BO95407 300 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 KAAG1Q9UBP8 84 aa10.07□□□□□ -0.8
COL4A6-209ENST00000545689 MMP23AO75900 390 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 IGHV2-5P01817 119 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 NDPQ00604 133 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 VWC2Q2TAL6 325 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 FAM104BQ5XKR9 115 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 PIP4P2Q8N4L2 257 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 POLR3KQ9Y2Y1 108 aaPredicted RBP10.06□□□□□ -0.8
COL4A6-209ENST00000545689 TRAV12-3A0A0B4J271 114 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 UBE2V1Q13404 147 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 ARMS2P0C7Q2 107 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 TRPT1Q86TN4 253 aaKnown RBP10.06□□□□□ -0.8
COL4A6-209ENST00000545689 ZNF688P0C7X2 276 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 HAPLN4Q86UW8 402 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 LURAP1LQ8IV03 231 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 Q8N8P6 123 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 TMEM141Q96I45 108 aa10.06□□□□□ -0.8
COL4A6-209ENST00000545689 IGHV2-70DA0A0C4DH43 119 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 FCN3O75636 299 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 CHCHD5Q9BSY4 110 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 BPESC1Q9GZL8 116 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 KIAA1671Q9BY89 1806 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 MPV17L2Q567V2 206 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 BRD3OSQ6XYD6 125 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 DMRTC2Q8IXT2 367 aaPredicted RBP10.05□□□□□ -0.8
COL4A6-209ENST00000545689 C14orf178Q8N769 122 aaPredicted RBP10.05□□□□□ -0.8
COL4A6-209ENST00000545689 LINC00479Q96M42 142 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 LSM4Q9Y4Z0 139 aaKnown RBP10.05□□□□□ -0.8
COL4A6-209ENST00000545689 GGTLC3B5MD39 225 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 RNF166Q96A37 237 aaPredicted RBP10.05□□□□□ -0.8
COL4A6-209ENST00000545689 CRPP02741 224 aa10.05□□□□□ -0.8
COL4A6-209ENST00000545689 DLX4Q92988 240 aaPredicted RBP10.05□□□□□ -0.8
COL4A6-209ENST00000545689 SSC4DQ8WTU2 575 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 ATP6V0E1O15342 81 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 UNQ6494/PRO21346Q6UXR6 183 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 CHAC1Q9BUX1 264 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 IGKV3D-20A0A0C4DH25 116 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 IL17RELQ6ZVW7 336 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 A0A087X0K7 114 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 IGHV1-69DA0A0B4J2H0 117 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 SAP30O75446 220 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 DKK1O94907 266 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 IGHV1-69P01742 117 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 KIR3DS1Q14943 382 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 ZC2HC1BQ5TFG8 222 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 HELZP42694 1942 aaKnown RBP10.04□□□□□ -0.8
COL4A6-209ENST00000545689 K7EM74 188 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 ERCC8Q13216 396 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 FANCMQ8IYD8 2048 aa10.04□□□□□ -0.8
COL4A6-209ENST00000545689 MYMXA0A1B0GTQ4 84 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 RHODO00212 210 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 PRR20EP86478 221 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 PRR20CP86479 221 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 PRR20DP86480 221 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 PRR20BP86481 221 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 PRR20AP86496 221 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 NDUFA4O00483 81 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 MSMBP08118 114 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 CYYR1Q96J86 154 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 TP53BP1Q12888 1972 aaPredicted RBP10.03□□□□□ -0.8
COL4A6-209ENST00000545689 LY6G5BQ8NDX9 201 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 WFDC12Q8WWY7 111 aa10.03□□□□□ -0.8
COL4A6-209ENST00000545689 WT1-ASQ06250 92 aa10.02□□□□□ -0.8
COL4A6-209ENST00000545689 NEGR1Q7Z3B1 354 aa10.02□□□□□ -0.8
COL4A6-209ENST00000545689 HTN3P15516 51 aa10.02□□□□□ -0.81
COL4A6-209ENST00000545689 ZNRD1Q9P1U0 126 aa10.02□□□□□ -0.81
COL4A6-209ENST00000545689 RP1P56715 2156 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms