RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 GZMBP10144 247 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 SRSF4Q08170 494 aaKnown RBP12□□□□□ -0.49
COL17A1-201ENST00000353479 DNLZQ5SXM8 178 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 LINC00311Q8N616 119 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 DERL1Q9BUN8 251 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 KAAG1Q9UBP8 84 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 WISP2O76076 250 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 NDUFB8O95169 186 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 CMC4P56277 68 aaPredicted RBP12□□□□□ -0.49
COL17A1-201ENST00000353479 C11orf53Q8IXP5 236 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 Q8TAT8 98 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 NDUFA4L2Q9NRX3 87 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 RNF114Q9Y508 228 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 DOCK10Q96BY6 2186 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 TRAV1-1A0A0B4J248 108 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 TRGV4A0A0C4DH28 118 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 J3QLI3 93 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 DAZ1Q9NQZ3 744 aaKnown RBP12□□□□□ -0.49
COL17A1-201ENST00000353479 C22orf46C9J442 243 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 NUDT10Q8NFP7 164 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 NUDT11Q96G61 164 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 HIST1H4GQ99525 98 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 SPOCK3Q9BQ16 436 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 CTSZQ9UBR2 303 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 SRRM4A7MD48 611 aaKnown RBP11.99□□□□□ -0.49
COL17A1-201ENST00000353479 FAM19A2Q8N3H0 131 aa11.99□□□□□ -0.49
COL17A1-201ENST00000353479 TPSG1Q9NRR2 321 aa11.99□□□□□ -0.49
COL17A1-201ENST00000353479 IGHV2-70P01814 119 aa11.99□□□□□ -0.49
COL17A1-201ENST00000353479 SEM1Q6ZVN7 128 aa11.99□□□□□ -0.49
COL17A1-201ENST00000353479 ST20Q9HBF5 79 aa11.99□□□□□ -0.49
COL17A1-201ENST00000353479 IGHV2-5P01817 119 aa11.99□□□□□ -0.49
COL17A1-201ENST00000353479 LCN12Q6JVE5 192 aa11.99□□□□□ -0.49
COL17A1-201ENST00000353479 LYL1P12980 280 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 CACNG7P62955 275 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 CIRBPQ14011 172 aaKnown RBP11.98□□□□□ -0.49
COL17A1-201ENST00000353479 TDGF1P3P51864 188 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 ZNF138P52744 262 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 TSKUQ8WUA8 353 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 FOXC2Q99958 501 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 TMEM238LA0A1B0GVL6 79 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 A6NJY4 79 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 IGKV1-39P01597 117 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 IGKV1D-39P04432 117 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 HINT1P49773 126 aaPredicted RBP11.98□□□□□ -0.49
COL17A1-201ENST00000353479 SLC25A34Q6PIV7 304 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 TRAV12-3A0A0B4J271 114 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 DEFB121Q5J5C9 76 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 FAM120AOSQ5T036 256 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 C1orf122Q6ZSJ8 110 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 C2orf88Q9BSF0 95 aa11.98□□□□□ -0.49
COL17A1-201ENST00000353479 OR11H12B2RN74 326 aa11.97□□□□□ -0.49
COL17A1-201ENST00000353479 ATP5LO75964 103 aa11.97□□□□□ -0.49
COL17A1-201ENST00000353479 ADMP35318 185 aa11.97□□□□□ -0.49
COL17A1-201ENST00000353479 RNF166Q96A37 237 aaPredicted RBP11.97□□□□□ -0.49
COL17A1-201ENST00000353479 FNDC10F2Z333 226 aa11.97□□□□□ -0.49
COL17A1-201ENST00000353479 TRAV8-1A0A0A6YYK1 113 aa11.97□□□□□ -0.49
COL17A1-201ENST00000353479 FGF23Q9GZV9 251 aaPredicted RBP11.97□□□□□ -0.49
COL17A1-201ENST00000353479 EVI2AP22794 236 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 ARL6IP6Q8N6S5 226 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 CBY1Q9Y3M2 126 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 UQCR10Q9UDW1 63 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 MALRD1Q5VYJ5 2156 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 TRAV8-6A0A0B4J262 113 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 WIPF3A6NGB9 483 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 F2Z2F3 143 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 SHANK2-AS3Q9BTD1 123 aa11.96□□□□□ -0.49
COL17A1-201ENST00000353479 PTPRQQ9UMZ3 2332 aa11.96□□□□□ -0.5
COL17A1-201ENST00000353479 RPLP1P05386 114 aaKnown RBP11.96□□□□□ -0.5
COL17A1-201ENST00000353479 RPL24P83731 157 aaKnown RBP11.95□□□□□ -0.5
COL17A1-201ENST00000353479 OR11H1Q8NG94 326 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 OR11H2Q8NH07 326 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 Q8NA96 180 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 RCHY1Q96PM5 261 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 PARD6GQ9BYG4 376 aaPredicted RBP11.95□□□□□ -0.5
COL17A1-201ENST00000353479 PSG3Q16557 428 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 PRR31Q5SQ13 230 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 UBE2E2Q96LR5 201 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 CUL9Q8IWT3 2517 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.95□□□□□ -0.5
COL17A1-201ENST00000353479 NRGNQ92686 78 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 LINC00477Q96M19 166 aa11.95□□□□□ -0.5
COL17A1-201ENST00000353479 HOXA3O43365 443 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-201ENST00000353479 ALKBH7Q9BT30 221 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-201ENST00000353479 SERF1AO75920 110 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 HOXB4P17483 251 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-201ENST00000353479 KRTAP27-1Q3LI81 207 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 IGHV3-73A0A0B4J1V6 119 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 DEFB113Q30KQ7 82 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 TOMM7Q9P0U1 55 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 IGHV4-61A0A0C4DH41 118 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 LOC107984156A0A0G2JMH3 177 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 LINC01619G3V211 115 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 C12orf54Q6X4T0 127 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 LINC01551Q86U37 167 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 ARL17AQ8IVW1 177 aa11.94□□□□□ -0.5
COL17A1-201ENST00000353479 SH2D1AO60880 128 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 WT1-ASQ06250 92 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 LYPD1Q8N2G4 141 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 MED13Q9UHV7 2174 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 GFI1BQ5VTD9 330 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms