RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W UBP13P38187 747 aa6.33□□□□□ -1.4
RPN11YFR004W EXO5P38289 585 aa6.33□□□□□ -1.4
RPN11YFR004W MED8P38304 223 aa6.33□□□□□ -1.4
RPN11YFR004W TAT2P38967 592 aa6.33□□□□□ -1.4
RPN11YFR004W YER186CP40101 306 aa6.33□□□□□ -1.4
RPN11YFR004W YJL049WP47048 450 aa6.33□□□□□ -1.4
RPN11YFR004W RIM8P53179 542 aa6.33□□□□□ -1.4
RPN11YFR004W RTT102P53330 157 aa6.33□□□□□ -1.4
RPN11YFR004W CAF120P53836 1060 aa6.33□□□□□ -1.4
RPN11YFR004W EEB1Q02891 456 aa6.33□□□□□ -1.4
RPN11YFR004W CEF1Q03654 590 aaPredicted RBP6.33□□□□□ -1.4
RPN11YFR004W NSE5Q03718 556 aa6.33□□□□□ -1.4
RPN11YFR004W BDS1Q08347 646 aa6.33□□□□□ -1.4
RPN11YFR004W MEX67Q99257 599 aaKnown RBP6.33□□□□□ -1.4
RPN11YFR004W YLR462WO13556 202 aa6.32□□□□□ -1.4
RPN11YFR004W RPS14AP06367 137 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W MAS1P10507 462 aa6.32□□□□□ -1.4
RPN11YFR004W KAR3P17119 729 aa6.32□□□□□ -1.4
RPN11YFR004W CLN2P20438 545 aa6.32□□□□□ -1.4
RPN11YFR004W GCD6P32501 712 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W YSC83P32792 385 aa6.32□□□□□ -1.4
RPN11YFR004W BLI1P35727 113 aa6.32□□□□□ -1.4
RPN11YFR004W RRT2P38332 387 aa6.32□□□□□ -1.4
RPN11YFR004W PCM1P38628 557 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W HIS2P38635 335 aa6.32□□□□□ -1.4
RPN11YFR004W YHL049CP38722 271 aa6.32□□□□□ -1.4
RPN11YFR004W RPS14BP39516 138 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W YEL075CP39972 122 aa6.32□□□□□ -1.4
RPN11YFR004W LCP5P40079 357 aaPredicted RBP6.32□□□□□ -1.4
RPN11YFR004W YER189WP40104 122 aa6.32□□□□□ -1.4
RPN11YFR004W EMW1P42842 904 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W YFL064CP43540 174 aa6.32□□□□□ -1.4
RPN11YFR004W TRS85P46944 698 aa6.32□□□□□ -1.4
RPN11YFR004W ZAP1P47043 880 aa6.32□□□□□ -1.4
RPN11YFR004W CUL3P53202 744 aa6.32□□□□□ -1.4
RPN11YFR004W ESBP6P53918 673 aa6.32□□□□□ -1.4
RPN11YFR004W SFB2P53953 876 aa6.32□□□□□ -1.4
RPN11YFR004W YNL011CP53980 444 aa6.32□□□□□ -1.4
RPN11YFR004W CDC55Q00362 526 aa6.32□□□□□ -1.4
RPN11YFR004W RLP24Q07915 199 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W SPE3Q12074 293 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W RIO1Q12196 484 aaKnown RBP6.32□□□□□ -1.4
RPN11YFR004W OSW2Q12202 724 aa6.32□□□□□ -1.4
RPN11YFR004W ZPS1Q12512 249 aa6.32□□□□□ -1.4
RPN11YFR004W YBL111CQ3E7Y5 667 aa6.32□□□□□ -1.4
RPN11YFR004W MSB2P32334 1306 aa6.31□□□□□ -1.4
RPN11YFR004W PYC1P11154 1178 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W SSD1P24276 1250 aaKnown RBP RIP-Chip data6.31□□□□□ -1.4not detected
RPN11YFR004W PEX34P25584 144 aa6.31□□□□□ -1.4
RPN11YFR004W GPI10P30777 616 aa6.31□□□□□ -1.4
RPN11YFR004W MUD1P32605 298 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W PEP7P32609 515 aa6.31□□□□□ -1.4
RPN11YFR004W PPG1P32838 368 aa6.31□□□□□ -1.4
RPN11YFR004W YBR284WP38150 797 aa6.31□□□□□ -1.4
RPN11YFR004W PBP2P38151 413 aaKnown RBP RIP-Chip data6.31□□□□□ -1.4not detected
RPN11YFR004W NCL1P38205 684 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W ECM2P38241 364 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W VID24P38263 362 aa6.31□□□□□ -1.4
RPN11YFR004W TIF5P38431 405 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W PSY2P40164 858 aa6.31□□□□□ -1.4
RPN11YFR004W LSB3P43603 459 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W NMD5P46970 1048 aa6.31□□□□□ -1.4
RPN11YFR004W MTO1P53070 669 aa6.31□□□□□ -1.4
RPN11YFR004W TAM41P53230 385 aa6.31□□□□□ -1.4
RPN11YFR004W ALG11P53954 548 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W SLG1P54867 378 aa6.31□□□□□ -1.4
RPN11YFR004W UTP6Q02354 440 aaKnown RBP6.31□□□□□ -1.4
RPN11YFR004W TDA9Q04545 1251 aa6.31□□□□□ -1.4
RPN11YFR004W YML053CQ04978 212 aa6.31□□□□□ -1.4
RPN11YFR004W CUR1Q06469 252 aa6.31□□□□□ -1.4
RPN11YFR004W CDC33P07260 213 aaKnown RBP6.3□□□□□ -1.4
RPN11YFR004W CDC4P07834 779 aa6.3□□□□□ -1.4
RPN11YFR004W HOM2P13663 365 aaKnown RBP6.3□□□□□ -1.4
RPN11YFR004W KIP1P28742 1111 aa6.3□□□□□ -1.4
RPN11YFR004W CBF2P32504 956 aa6.3□□□□□ -1.4
RPN11YFR004W UTR2P32623 467 aa6.3□□□□□ -1.4
RPN11YFR004W OAF3P36023 863 aa6.3□□□□□ -1.4
RPN11YFR004W YJR039WP47107 1121 aa6.3□□□□□ -1.4
RPN11YFR004W ENV11P53246 860 aa6.3□□□□□ -1.4
RPN11YFR004W RSC4Q02206 625 aa6.3□□□□□ -1.4
RPN11YFR004W ADA2Q02336 434 aa6.3□□□□□ -1.4
RPN11YFR004W USA1Q03714 838 aa6.3□□□□□ -1.4
RPN11YFR004W YHM2Q04013 314 aa6.3□□□□□ -1.4
RPN11YFR004W DON1Q05610 365 aa6.3□□□□□ -1.4
RPN11YFR004W FMP25Q08023 583 aa6.3□□□□□ -1.4
RPN11YFR004W ACM1Q08981 209 aa6.3□□□□□ -1.4
RPN11YFR004W PUS1Q12211 544 aaKnown RBP6.3□□□□□ -1.4
RPN11YFR004W APM4Q99186 491 aa6.3□□□□□ -1.4
RPN11YFR004W ACC1Q00955 2233 aaKnown RBP6.3□□□□□ -1.4
RPN11YFR004W IRA1P18963 3092 aa6.29□□□□□ -1.4
RPN11YFR004W FUS1P11710 512 aa6.29□□□□□ -1.4
RPN11YFR004W KGD2P19262 463 aaPredicted RBP6.29□□□□□ -1.4
RPN11YFR004W MRPL33P20084 86 aa6.29□□□□□ -1.4
RPN11YFR004W PDE1P22434 369 aa6.29□□□□□ -1.4
RPN11YFR004W DAL2P25335 343 aa6.29□□□□□ -1.4
RPN11YFR004W PIN4P34217 668 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4not detected
RPN11YFR004W FMO1P38866 432 aa6.29□□□□□ -1.4
RPN11YFR004W DSN1P40568 576 aa6.29□□□□□ -1.4
RPN11YFR004W SAP185P40856 1058 aa6.29□□□□□ -1.4
RPN11YFR004W URB2P47108 1174 aa6.29□□□□□ -1.4
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms