RNA–Protein interactions for RNA: ENST00000560549.5

TMOD3-207, Transcript of tropomodulin 3, humanhuman

TSL 1 (best)

Gene TMOD3, Length 1,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMOD3-207ENST00000560549 GOLGA3Q08378 1498 aa6.62□□□□□ -1.35
TMOD3-207ENST00000560549 TOPBP1Q92547 1522 aa6.62□□□□□ -1.35
TMOD3-207ENST00000560549 DNMBPQ6XZF7 1577 aa6.62□□□□□ -1.35
TMOD3-207ENST00000560549 BIVM-ERCC5R4GMW8 1640 aa6.62□□□□□ -1.35
TMOD3-207ENST00000560549 PRR19A6NJB7 356 aa6.61□□□□□ -1.35
TMOD3-207ENST00000560549 P4HBP07237 508 aaKnown RBP6.61□□□□□ -1.35
TMOD3-207ENST00000560549 BMP3P12645 472 aa6.61□□□□□ -1.35
TMOD3-207ENST00000560549 FCGRTP55899 365 aa6.61□□□□□ -1.35
TMOD3-207ENST00000560549 PTPN12Q05209 780 aaKnown RBP6.61□□□□□ -1.35
TMOD3-207ENST00000560549 SGO2Q562F6 1265 aa6.61□□□□□ -1.35
TMOD3-207ENST00000560549 C3orf58Q8NDZ4 430 aa6.61□□□□□ -1.35
TMOD3-207ENST00000560549 DBNDD2Q9BQY9 259 aa6.61□□□□□ -1.35
TMOD3-207ENST00000560549 RAPGEF2Q9Y4G8 1499 aa6.61□□□□□ -1.35
TMOD3-207ENST00000560549 MED26O95402 600 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 POU4F3Q15319 338 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 FDX2Q6P4F2 183 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 NBPF11Q86T75 865 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 STK35Q8TDR2 534 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 OSBPL7Q9BZF2 842 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 RNF19AQ9NV58 838 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 TGFB1P01137 390 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 EXOSC6Q5RKV6 272 aaKnown RBP6.6□□□□□ -1.35
TMOD3-207ENST00000560549 NUTM2GQ5VZR2 741 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 CDPF1Q6NVV7 123 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 BEND4Q6ZU67 534 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 SHISA5Q8N114 240 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 C2CD4AQ8NCU7 369 aaPredicted RBP6.6□□□□□ -1.35
TMOD3-207ENST00000560549 TRAK1Q9UPV9 953 aa6.6□□□□□ -1.35
TMOD3-207ENST00000560549 SART1O43290 800 aaKnown RBP6.59□□□□□ -1.36
TMOD3-207ENST00000560549 SPINK2P20155 84 aa6.59□□□□□ -1.36
TMOD3-207ENST00000560549 C12orf50Q8NA57 414 aaPredicted RBP6.59□□□□□ -1.36
TMOD3-207ENST00000560549 WDR89Q96FK6 387 aaPredicted RBP6.59□□□□□ -1.36
TMOD3-207ENST00000560549 PSMG3-AS1Q96PY0 264 aa6.59□□□□□ -1.36
TMOD3-207ENST00000560549 CYP4F12Q9HCS2 524 aa6.59□□□□□ -1.36
TMOD3-207ENST00000560549 NLRP2Q9NX02 1062 aa6.59□□□□□ -1.36
TMOD3-207ENST00000560549 KIF21BO75037 1637 aa6.59□□□□□ -1.36
TMOD3-207ENST00000560549 COBLO75128 1261 aa6.58□□□□□ -1.36
TMOD3-207ENST00000560549 ADH5P11766 374 aa6.58□□□□□ -1.36
TMOD3-207ENST00000560549 DTHD1Q6ZMT9 781 aa6.58□□□□□ -1.36
TMOD3-207ENST00000560549 ZSCAN29Q8IWY8 852 aaPredicted RBP6.58□□□□□ -1.36
TMOD3-207ENST00000560549 WDR18Q9BV38 432 aa6.58□□□□□ -1.36
TMOD3-207ENST00000560549 ACTL7BQ9Y614 415 aa6.58□□□□□ -1.36
TMOD3-207ENST00000560549 IFT140Q96RY7 1462 aa6.58□□□□□ -1.36
TMOD3-207ENST00000560549 PRXQ9BXM0 1461 aa6.58□□□□□ -1.36
TMOD3-207ENST00000560549 CYP11A1P05108 521 aa6.57□□□□□ -1.36
TMOD3-207ENST00000560549 MAP4P27816 1152 aaKnown RBP6.57□□□□□ -1.36
TMOD3-207ENST00000560549 SSTR4P31391 388 aa6.57□□□□□ -1.36
TMOD3-207ENST00000560549 SOX4Q06945 474 aaPredicted RBP6.57□□□□□ -1.36
TMOD3-207ENST00000560549 RPS26P11Q5JNZ5 115 aaPredicted RBP6.57□□□□□ -1.36
TMOD3-207ENST00000560549 PDZD3Q86UT5 571 aa6.57□□□□□ -1.36
TMOD3-207ENST00000560549 NPAS4Q8IUM7 802 aa6.57□□□□□ -1.36
TMOD3-207ENST00000560549 EZH1Q92800 747 aaPredicted RBP6.57□□□□□ -1.36
TMOD3-207ENST00000560549 ZC3H12CQ9C0D7 883 aaKnown RBP6.57□□□□□ -1.36
TMOD3-207ENST00000560549 KCNF1Q9H3M0 494 aa6.57□□□□□ -1.36
TMOD3-207ENST00000560549 CCDC86Q9H6F5 360 aaKnown RBP6.57□□□□□ -1.36
TMOD3-207ENST00000560549 PCMTD2Q9NV79 361 aa6.57□□□□□ -1.36
TMOD3-207ENST00000560549 POLA1P09884 1462 aaPredicted RBP6.57□□□□□ -1.36
TMOD3-207ENST00000560549 TTBK1Q5TCY1 1321 aaPredicted RBP6.56□□□□□ -1.36
TMOD3-207ENST00000560549 GAS2O43903 313 aaKnown RBP6.56□□□□□ -1.36
TMOD3-207ENST00000560549 FBXO24O75426 580 aa6.56□□□□□ -1.36
TMOD3-207ENST00000560549 INTS5Q6P9B9 1019 aaKnown RBP6.56□□□□□ -1.36
TMOD3-207ENST00000560549 SHKBP1Q8TBC3 707 aa6.56□□□□□ -1.36
TMOD3-207ENST00000560549 FBF1Q8TES7 1133 aa6.56□□□□□ -1.36
TMOD3-207ENST00000560549 FBLIM1Q8WUP2 373 aa6.56□□□□□ -1.36
TMOD3-207ENST00000560549 CORO1BQ9BR76 489 aa6.56□□□□□ -1.36
TMOD3-207ENST00000560549 GSX1Q9H4S2 264 aaPredicted RBP6.56□□□□□ -1.36
TMOD3-207ENST00000560549 GPN3Q9UHW5 284 aaPredicted RBP6.56□□□□□ -1.36
TMOD3-207ENST00000560549 SYNGAP1Q96PV0 1343 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 FGD5Q6ZNL6 1462 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 ZNF862O60290 1169 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 LIG1P18858 919 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 AKAP4Q5JQC9 854 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 RASIP1Q5U651 963 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 MPRIPQ6WCQ1 1025 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 DTX1Q86Y01 620 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 FAM105AQ9NUU6 356 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 PPP1R9AQ9ULJ8 1098 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 AKAP2Q9Y2D5 859 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 PCDHGC5Q9Y5F6 944 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 RIMBP3CA6NJZ7 1639 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 RIMBP3BA6NNM3 1639 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 TARBP1Q13395 1621 aaKnown RBP6.55□□□□□ -1.36
TMOD3-207ENST00000560549 RIMBP3Q9UFD9 1639 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 CLIP1P30622 1438 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 KIF27Q86VH2 1401 aa6.55□□□□□ -1.36
TMOD3-207ENST00000560549 AOC2O75106 756 aa6.54□□□□□ -1.36
TMOD3-207ENST00000560549 PAGE1O75459 146 aa6.54□□□□□ -1.36
TMOD3-207ENST00000560549 CPSF6Q16630 551 aaKnown RBP eCLIP6.54□□□□□ -1.36
TMOD3-207ENST00000560549 KRTAP9-2Q9BYQ4 174 aa6.54□□□□□ -1.36
TMOD3-207ENST00000560549 ZNF608Q9ULD9 1512 aaPredicted RBP6.54□□□□□ -1.36
TMOD3-207ENST00000560549 ANKRD33BA6NCL7 494 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 ENC1O14682 589 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 AP3B2Q13367 1082 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 PDE3AQ14432 1141 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 HP1BP3Q5SSJ5 553 aaPredicted RBP6.53□□□□□ -1.36
TMOD3-207ENST00000560549 MFSD14AQ96MC6 490 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 ZFYVE1Q9HBF4 777 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 TMEM39AQ9NV64 488 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 AP4E1Q9UPM8 1137 aa6.53□□□□□ -1.36
TMOD3-207ENST00000560549 RAD54L2Q9Y4B4 1467 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms