RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 KCND1Q9NSA2 647 aa14.19□□□□□ -0.14
SHMT2-207ENST00000553837 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.19□□□□□ -0.14
SHMT2-207ENST00000553837 WWC3Q9ULE0 1092 aa14.19□□□□□ -0.14
SHMT2-207ENST00000553837 V9GYY5 206 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-207ENST00000553837 WNK3Q9BYP7 1800 aa14.19□□□□□ -0.14
SHMT2-207ENST00000553837 GOLGA6L19H0YKK7 550 aa14.19□□□□□ -0.14
SHMT2-207ENST00000553837 LRRFIP1Q32MZ4 808 aaKnown RBP14.19□□□□□ -0.14
SHMT2-207ENST00000553837 ZNF622Q969S3 477 aaKnown RBP eCLIP14.19□□□□□ -0.14
SHMT2-207ENST00000553837 ZNF512BQ96KM6 892 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-207ENST00000553837 GOLPH3LQ9H4A5 285 aa14.19□□□□□ -0.14
SHMT2-207ENST00000553837 RCOR1Q9UKL0 485 aa14.19□□□□□ -0.14
SHMT2-207ENST00000553837 LRP5O75197 1615 aa14.18□□□□□ -0.14
SHMT2-207ENST00000553837 FGFR2P21802 821 aa14.18□□□□□ -0.14
SHMT2-207ENST00000553837 EIF5P55010 431 aaKnown RBP14.18□□□□□ -0.14
SHMT2-207ENST00000553837 TBC1D10CQ8IV04 446 aa14.18□□□□□ -0.14
SHMT2-207ENST00000553837 ACSBG1Q96GR2 724 aa14.18□□□□□ -0.14
SHMT2-207ENST00000553837 TRIM34Q9BYJ4 488 aa14.18□□□□□ -0.14
SHMT2-207ENST00000553837 GJB4Q9NTQ9 266 aa14.18□□□□□ -0.14
SHMT2-207ENST00000553837 ZNF446Q9NWS9 450 aa14.18□□□□□ -0.14
SHMT2-207ENST00000553837 KLF18A0A0U1RQI7 1052 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 TCRBV5S4A2TA0A5A2 114 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 TOM1O60784 492 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 IDH1O75874 414 aaKnown RBP14.17□□□□□ -0.14
SHMT2-207ENST00000553837 PSEN1P49768 467 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 HNRNPH2P55795 449 aaKnown RBP14.17□□□□□ -0.14
SHMT2-207ENST00000553837 SEC31BQ9NQW1 1179 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 CFAP45Q9UL16 551 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 ZNF532Q9HCE3 1301 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 USP27XA6NNY8 438 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 ZNF213O14771 459 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 H2AFXP16104 143 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-207ENST00000553837 PDE6AP16499 860 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 ARID4AP29374 1257 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-207ENST00000553837 TEX35Q5T0J7 233 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 DNAJC25Q9H1X3 360 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 ATRNO75882 1429 aa14.17□□□□□ -0.14
SHMT2-207ENST00000553837 COL22A1Q8NFW1 1626 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-207ENST00000553837 ITPK1Q13572 414 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 CYB5R4Q7L1T6 521 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 CCAR2Q8N163 923 aaKnown RBP14.16□□□□□ -0.14
SHMT2-207ENST00000553837 NCOA7Q8NI08 942 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 SENP2Q9HC62 589 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 INCENPQ9NQS7 918 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 ST7Q9NRC1 585 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 COL4A1P02462 1669 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 A0A0G2JS52 829 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 GOLGA8BA8MQT2 603 aa14.16□□□□□ -0.14
SHMT2-207ENST00000553837 CRKLP46109 303 aaKnown RBP14.16□□□□□ -0.14
SHMT2-207ENST00000553837 SNW1Q13573 536 aaKnown RBP14.16□□□□□ -0.14
SHMT2-207ENST00000553837 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.16□□□□□ -0.146e-7■■□□□ 14.2
SHMT2-207ENST00000553837 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-207ENST00000553837 ADAMTS2O95450 1211 aa14.15□□□□□ -0.14
SHMT2-207ENST00000553837 UBE3CQ15386 1083 aa14.15□□□□□ -0.14
SHMT2-207ENST00000553837 PUM3Q15397 648 aaKnown RBP14.15□□□□□ -0.14
SHMT2-207ENST00000553837 CCAR1Q8IX12 1150 aaKnown RBP14.15□□□□□ -0.14
SHMT2-207ENST00000553837 MARCH10Q8NA82 808 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-207ENST00000553837 FHOD1Q9Y613 1164 aa14.15□□□□□ -0.14
SHMT2-207ENST00000553837 TACC3Q9Y6A5 838 aa14.15□□□□□ -0.14
SHMT2-207ENST00000553837 SPATA31A1Q5TZJ5 1347 aa14.15□□□□□ -0.14
SHMT2-207ENST00000553837 MYH14Q7Z406 1995 aaKnown RBP14.15□□□□□ -0.14
SHMT2-207ENST00000553837 A0A087WWV3 80 aa14.15□□□□□ -0.15
SHMT2-207ENST00000553837 CCDC69A6NI79 296 aa14.15□□□□□ -0.15
SHMT2-207ENST00000553837 TUBB4AP04350 444 aa14.15□□□□□ -0.15
SHMT2-207ENST00000553837 LPIN2Q92539 896 aa14.15□□□□□ -0.15
SHMT2-207ENST00000553837 L2HGDHQ9H9P8 463 aa14.15□□□□□ -0.15
SHMT2-207ENST00000553837 CCDC87Q9NVE4 849 aa14.15□□□□□ -0.15
SHMT2-207ENST00000553837 FEZ2Q9UHY8 353 aaPredicted RBP14.15□□□□□ -0.15
SHMT2-207ENST00000553837 AHDC1Q5TGY3 1603 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-207ENST00000553837 C4AP0C0L4 1744 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 C4BP0C0L5 1744 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 ARAP2Q8WZ64 1704 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-207ENST00000553837 UBAP1LF5GYI3 381 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 CAMTA2O94983 1202 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 ATP6V1AP38606 617 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 TPM4P67936 248 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 RASGRF1Q13972 1273 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 IQCB1Q15051 598 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 TTF1Q15361 905 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-207ENST00000553837 CTR9Q6PD62 1173 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 RALYLQ86SE5 291 aaKnown RBP14.14□□□□□ -0.15
SHMT2-207ENST00000553837 ENGASEQ8NFI3 743 aa14.14□□□□□ -0.15
SHMT2-207ENST00000553837 STRBPQ96SI9 672 aaKnown RBP14.14□□□□□ -0.15
SHMT2-207ENST00000553837 TRMT1Q9NXH9 659 aaKnown RBP14.14□□□□□ -0.15
SHMT2-207ENST00000553837 KIF28PB7ZC32 967 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 CCZ1BP86790 482 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 CCZ1P86791 482 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-207ENST00000553837 ARID5BQ14865 1188 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 TXLNBQ8N3L3 684 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 SPATA5Q8NB90 893 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 EPB41L4AQ9HCS5 686 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-207ENST00000553837 ORC3Q9UBD5 711 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-207ENST00000553837 NEDD4P46934 1319 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 MROH5Q6ZUA9 1318 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 NPHP1O15259 732 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 APPP05067 770 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 POLR3DP05423 398 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-207ENST00000553837 RXRAP19793 462 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 GSDMDP57764 484 aa14.13□□□□□ -0.15
SHMT2-207ENST00000553837 DDB1Q16531 1140 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms