RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HSPA6P17066 643 aa20.66■□□□□ 0.9
LIG1-204ENST00000542460 CERS3Q8IU89 383 aa20.66■□□□□ 0.9
LIG1-204ENST00000542460 ZC3H15Q8WU90 426 aaKnown RBP20.66■□□□□ 0.9
LIG1-204ENST00000542460 HIP1O00291 1037 aa20.65■□□□□ 0.9
LIG1-204ENST00000542460 CHGBP05060 677 aa20.65■□□□□ 0.9
LIG1-204ENST00000542460 PPP4CP60510 307 aa20.65■□□□□ 0.9
LIG1-204ENST00000542460 SLFNL1Q499Z3 407 aa20.65■□□□□ 0.9
LIG1-204ENST00000542460 APPBP2Q92624 585 aa20.65■□□□□ 0.9
LIG1-204ENST00000542460 TDRD3Q9H7E2 651 aaKnown RBP20.65■□□□□ 0.9
LIG1-204ENST00000542460 MIGA1Q8NAN2 632 aa20.64■□□□□ 0.9
LIG1-204ENST00000542460 USP40Q9NVE5 1235 aa20.64■□□□□ 0.9
LIG1-204ENST00000542460 AATFQ9NY61 560 aaKnown RBP eCLIP20.64■□□□□ 0.9
LIG1-204ENST00000542460 MAST2Q6P0Q8 1798 aa20.64■□□□□ 0.89
LIG1-204ENST00000542460 MAGEB6P1A0A0J9YX57 407 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 PLCG2P16885 1265 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 ZMYM1Q5SVZ6 1142 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 CDC42EP5Q6NZY7 148 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 PGAP2Q9UHJ9 254 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 MYO5AQ9Y4I1 1855 aaKnown RBP20.63■□□□□ 0.89
LIG1-204ENST00000542460 SPDYE2Q495Y8 402 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 OSBP2Q969R2 916 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 PUS7LQ9H0K6 701 aaKnown RBP20.63■□□□□ 0.89
LIG1-204ENST00000542460 DIAPH3Q9NSV4 1193 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 ZNF70Q9UC06 446 aaPredicted RBP20.63■□□□□ 0.89
LIG1-204ENST00000542460 CLEC11AQ9Y240 323 aa20.63■□□□□ 0.89
LIG1-204ENST00000542460 CLRN2A0PK11 232 aa20.62■□□□□ 0.89
LIG1-204ENST00000542460 ANGEL2Q5VTE6 544 aaKnown RBP20.62■□□□□ 0.89
LIG1-204ENST00000542460 LDHDQ86WU2 507 aa20.62■□□□□ 0.89
LIG1-204ENST00000542460 AIDAQ96BJ3 306 aa20.62■□□□□ 0.89
LIG1-204ENST00000542460 RIOK1Q9BRS2 568 aaKnown RBP20.62■□□□□ 0.89
LIG1-204ENST00000542460 HELLSQ9NRZ9 838 aa20.62■□□□□ 0.89
LIG1-204ENST00000542460 TMOD2Q9NZR1 351 aa20.62■□□□□ 0.89
LIG1-204ENST00000542460 ASTN2O75129 1339 aaPredicted RBP20.61■□□□□ 0.89
LIG1-204ENST00000542460 MYH2Q9UKX2 1941 aa20.61■□□□□ 0.89
LIG1-204ENST00000542460 POTEIP0CG38 1075 aa20.61■□□□□ 0.89
LIG1-204ENST00000542460 POTEJP0CG39 1038 aa20.61■□□□□ 0.89
LIG1-204ENST00000542460 RHBDL3P58872 404 aa20.61■□□□□ 0.89
LIG1-204ENST00000542460 DYNLL1P63167 89 aaKnown RBP20.61■□□□□ 0.89
LIG1-204ENST00000542460 RBM46Q8TBY0 533 aaKnown RBP20.61■□□□□ 0.89
LIG1-204ENST00000542460 DCPSQ96C86 337 aaKnown RBP20.61■□□□□ 0.89
LIG1-204ENST00000542460 GGA3Q9NZ52 723 aa20.61■□□□□ 0.89
LIG1-204ENST00000542460 PITPNM2Q9BZ72 1349 aa20.6■□□□□ 0.89
LIG1-204ENST00000542460 NMIQ13287 307 aaPredicted RBP20.6■□□□□ 0.89
LIG1-204ENST00000542460 FKBP1CQ5VVH2 108 aa20.6■□□□□ 0.89
LIG1-204ENST00000542460 SH3RF3Q8TEJ3 882 aaPredicted RBP20.6■□□□□ 0.89
LIG1-204ENST00000542460 FAM227BQ96M60 508 aa20.6■□□□□ 0.89
LIG1-204ENST00000542460 VEZTQ9HBM0 779 aa20.6■□□□□ 0.89
LIG1-204ENST00000542460 ADAMTSL1Q8N6G6 1762 aa20.6■□□□□ 0.89
LIG1-204ENST00000542460 MBD4O95243 580 aa20.59■□□□□ 0.89
LIG1-204ENST00000542460 CHMLP26374 656 aa20.59■□□□□ 0.89
LIG1-204ENST00000542460 MCMDC2Q4G0Z9 681 aa20.59■□□□□ 0.89
LIG1-204ENST00000542460 SEC62Q99442 399 aaKnown RBP20.59■□□□□ 0.89
LIG1-204ENST00000542460 ARMT1Q9H993 441 aa20.59■□□□□ 0.89
LIG1-204ENST00000542460 A0A0D9SFI3 127 aa20.58■□□□□ 0.89
LIG1-204ENST00000542460 M0R2C6 588 aa20.58■□□□□ 0.89
LIG1-204ENST00000542460 CACNB3P54284 484 aa20.58■□□□□ 0.89
LIG1-204ENST00000542460 TNFAIP1Q13829 316 aa20.58■□□□□ 0.89
LIG1-204ENST00000542460 CWC27Q6UX04 472 aaKnown RBP20.58■□□□□ 0.89
LIG1-204ENST00000542460 APOBEC3FQ8IUX4 373 aaKnown RBP20.58■□□□□ 0.89
LIG1-204ENST00000542460 TEX11Q8IYF3 940 aa20.58■□□□□ 0.89
LIG1-204ENST00000542460 LCORLQ8N3X6 602 aa20.58■□□□□ 0.89
LIG1-204ENST00000542460 IDI2Q9BXS1 227 aa20.58■□□□□ 0.89
LIG1-204ENST00000542460 WDHD1O75717 1129 aaPredicted RBP20.58■□□□□ 0.88
LIG1-204ENST00000542460 RUFY2Q8WXA3 655 aa20.58■□□□□ 0.88
LIG1-204ENST00000542460 STRBPQ96SI9 672 aaKnown RBP20.58■□□□□ 0.88
LIG1-204ENST00000542460 CRNKL1Q9BZJ0 848 aaKnown RBP20.58■□□□□ 0.88
LIG1-204ENST00000542460 TCP10L2B9ZVM9 353 aa20.57■□□□□ 0.88
LIG1-204ENST00000542460 GPAA1O43292 621 aa20.57■□□□□ 0.88
LIG1-204ENST00000542460 TNNI2P48788 182 aa20.57■□□□□ 0.88
LIG1-204ENST00000542460 SULF1Q8IWU6 871 aa20.57■□□□□ 0.88
LIG1-204ENST00000542460 MYH7P12883 1935 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 CDC45O75419 566 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 NPM3O75607 178 aaKnown RBP20.56■□□□□ 0.88
LIG1-204ENST00000542460 GNAT2P19087 354 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 NFIAQ12857 509 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 MAP1SQ66K74 1059 aaPredicted RBP20.56■□□□□ 0.88
LIG1-204ENST00000542460 CHADLQ6NUI6 762 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 CASC1Q6TDU7 716 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 CDC37L1Q7L3B6 337 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 KRT26Q7Z3Y9 468 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 FAM83AQ86UY5 434 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 TGFBRAP1Q8WUH2 860 aa20.56■□□□□ 0.88
LIG1-204ENST00000542460 ENTPD3O75355 529 aa20.55■□□□□ 0.88
LIG1-204ENST00000542460 USP5P45974 858 aa20.55■□□□□ 0.88
LIG1-204ENST00000542460 MFAP1P55081 439 aaKnown RBP20.55■□□□□ 0.88
LIG1-204ENST00000542460 DEFB129Q9H1M3 183 aa20.55■□□□□ 0.88
LIG1-204ENST00000542460 FAM198AQ9UFP1 575 aa20.55■□□□□ 0.88
LIG1-204ENST00000542460 SLC4A4Q9Y6R1 1079 aa20.55■□□□□ 0.88
LIG1-204ENST00000542460 APLP1P51693 650 aa20.54■□□□□ 0.88
LIG1-204ENST00000542460 FSTL1Q12841 308 aa20.54■□□□□ 0.88
LIG1-204ENST00000542460 PICALMQ13492 652 aa20.54■□□□□ 0.88
LIG1-204ENST00000542460 RASA3Q14644 834 aa20.54■□□□□ 0.88
LIG1-204ENST00000542460 FAM151AQ8WW52 585 aa20.54■□□□□ 0.88
LIG1-204ENST00000542460 DDX4Q9NQI0 724 aaKnown RBP20.54■□□□□ 0.88
LIG1-204ENST00000542460 SCAF8Q9UPN6 1271 aaKnown RBP20.54■□□□□ 0.88
LIG1-204ENST00000542460 PPP2R3BQ9Y5P8 575 aa20.54■□□□□ 0.88
LIG1-204ENST00000542460 PRKAB2O43741 272 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 TCP10Q12799 353 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 CCDC129Q6ZRS4 1044 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 USP48Q86UV5 1035 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms