RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ZNF70Q9UC06 446 aaPredicted RBP17.58■□□□□ 0.4
CPSF1-206ENST00000531480 MAP4K4O95819 1239 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-206ENST00000531480 PPP4CP60510 307 aa17.57■□□□□ 0.4
CPSF1-206ENST00000531480 MAP3K12Q12852 859 aa17.57■□□□□ 0.4
CPSF1-206ENST00000531480 NAA16Q6N069 864 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-206ENST00000531480 ADGRA1Q86SQ6 560 aa17.57■□□□□ 0.4
CPSF1-206ENST00000531480 APOBEC3FQ8IUX4 373 aaKnown RBP17.57■□□□□ 0.4
CPSF1-206ENST00000531480 KLRG1Q96E93 195 aa17.57■□□□□ 0.4
CPSF1-206ENST00000531480 TDRD3Q9H7E2 651 aaKnown RBP17.57■□□□□ 0.4
CPSF1-206ENST00000531480 TCRBV5S4A2TA0A5A2 114 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 IDH1O75874 414 aaKnown RBP17.56■□□□□ 0.4
CPSF1-206ENST00000531480 RHBDL3P58872 404 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 CDC42EP5Q6NZY7 148 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 KRT26Q7Z3Y9 468 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 TICAM2Q86XR7 235 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 KBTBD3Q8NAB2 608 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 CCDC136Q96JN2 1154 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 GLIS2Q9BZE0 524 aaPredicted RBP17.56■□□□□ 0.4
CPSF1-206ENST00000531480 PPP4R2Q9NY27 417 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 PPP2R3BQ9Y5P8 575 aa17.56■□□□□ 0.4
CPSF1-206ENST00000531480 NPM3O75607 178 aaKnown RBP17.55■□□□□ 0.4
CPSF1-206ENST00000531480 PDE6AP16499 860 aa17.55■□□□□ 0.4
CPSF1-206ENST00000531480 SULF1Q8IWU6 871 aa17.55■□□□□ 0.4
CPSF1-206ENST00000531480 IDI2Q9BXS1 227 aa17.55■□□□□ 0.4
CPSF1-206ENST00000531480 RPAP1Q9BWH6 1393 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-206ENST00000531480 CLRN2A0PK11 232 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 ADD2P35612 726 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 BTDP43251 543 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 TNFAIP1Q13829 316 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 UBE3CQ15386 1083 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 SLC9C2Q5TAH2 1124 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 USP48Q86UV5 1035 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 FAM83AQ86UY5 434 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 MAGEB6Q8N7X4 407 aa17.54■□□□□ 0.4
CPSF1-206ENST00000531480 CNTNAP1P78357 1384 aa17.53■□□□□ 0.4
CPSF1-206ENST00000531480 AK9Q5TCS8 1911 aa17.53■□□□□ 0.4
CPSF1-206ENST00000531480 ADM5C9JUS6 153 aa17.53■□□□□ 0.4
CPSF1-206ENST00000531480 CYP7A1P22680 504 aa17.53■□□□□ 0.4
CPSF1-206ENST00000531480 CERS3Q8IU89 383 aa17.53■□□□□ 0.4
CPSF1-206ENST00000531480 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.53■□□□□ 0.43e-11■■■■■ 33.7
CPSF1-206ENST00000531480 DEFB129Q9H1M3 183 aa17.53■□□□□ 0.4
CPSF1-206ENST00000531480 ZNF532Q9HCE3 1301 aa17.52■□□□□ 0.4
CPSF1-206ENST00000531480 TRAF5O00463 557 aa17.52■□□□□ 0.4
CPSF1-206ENST00000531480 WDHD1O75717 1129 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-206ENST00000531480 EVI5LQ96CN4 794 aa17.52■□□□□ 0.4
CPSF1-206ENST00000531480 TEPSINQ96N21 525 aa17.52■□□□□ 0.4
CPSF1-206ENST00000531480 RIOK1Q9BRS2 568 aaKnown RBP17.52■□□□□ 0.4
CPSF1-206ENST00000531480 USP40Q9NVE5 1235 aa17.52■□□□□ 0.4
CPSF1-206ENST00000531480 FAM198AQ9UFP1 575 aa17.52■□□□□ 0.4
CPSF1-206ENST00000531480 COL2A1P02458 1487 aaPredicted RBP17.51■□□□□ 0.39
CPSF1-206ENST00000531480 BAG3O95817 575 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 PLCG2P16885 1265 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 FMR1Q06787 632 aaKnown RBP eCLIP17.51■□□□□ 0.395e-7■■■■□ 21.1
CPSF1-206ENST00000531480 NFIAQ12857 509 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 RASA3Q14644 834 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 IFFO2Q5TF58 517 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 CST9Q5W186 159 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 ZSCAN25Q6NSZ9 544 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 CDCA5Q96FF9 252 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 VEZTQ9HBM0 779 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 TMOD2Q9NZR1 351 aa17.51■□□□□ 0.39
CPSF1-206ENST00000531480 DDX60LQ5H9U9 1706 aaKnown RBP17.5■□□□□ 0.39
CPSF1-206ENST00000531480 SSC5DA1L4H1 1573 aa17.5■□□□□ 0.39
CPSF1-206ENST00000531480 ENTPD3O75355 529 aa17.5■□□□□ 0.39
CPSF1-206ENST00000531480 ZFYP08048 801 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-206ENST00000531480 DLK2Q6UY11 383 aa17.5■□□□□ 0.39
CPSF1-206ENST00000531480 FAM151AQ8WW52 585 aa17.5■□□□□ 0.39
CPSF1-206ENST00000531480 AATFQ9NY61 560 aaKnown RBP eCLIP17.5■□□□□ 0.39
CPSF1-206ENST00000531480 SCAF8Q9UPN6 1271 aaKnown RBP17.5■□□□□ 0.39
CPSF1-206ENST00000531480 PAPPA2Q9BXP8 1791 aa17.5■□□□□ 0.39
CPSF1-206ENST00000531480 TCP10L2B9ZVM9 353 aa17.49■□□□□ 0.39
CPSF1-206ENST00000531480 CHGBP05060 677 aa17.49■□□□□ 0.39
CPSF1-206ENST00000531480 TNNI2P48788 182 aa17.49■□□□□ 0.39
CPSF1-206ENST00000531480 CACNB3P54284 484 aa17.49■□□□□ 0.39
CPSF1-206ENST00000531480 TTC22Q5TAA0 569 aa17.49■□□□□ 0.39
CPSF1-206ENST00000531480 DDX4Q9NQI0 724 aaKnown RBP17.49■□□□□ 0.39
CPSF1-206ENST00000531480 ATRNL1Q5VV63 1379 aa17.49■□□□□ 0.39
CPSF1-206ENST00000531480 RNF113AO15541 343 aaKnown RBP17.48■□□□□ 0.39
CPSF1-206ENST00000531480 GSPT1P15170 499 aaKnown RBP17.48■□□□□ 0.39
CPSF1-206ENST00000531480 LRRFIP1Q32MZ4 808 aaKnown RBP17.48■□□□□ 0.39
CPSF1-206ENST00000531480 SH3RF3Q8TEJ3 882 aaPredicted RBP17.48■□□□□ 0.39
CPSF1-206ENST00000531480 NOL10Q9BSC4 688 aaKnown RBP17.48■□□□□ 0.39
CPSF1-206ENST00000531480 MKRN1Q9UHC7 482 aaKnown RBP17.48■□□□□ 0.39
CPSF1-206ENST00000531480 RGS3P49796 1198 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 DYNLL1P63167 89 aaKnown RBP17.47■□□□□ 0.39
CPSF1-206ENST00000531480 FKBP1BP68106 108 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 SLFNL1Q499Z3 407 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 JMYQ8N9B5 988 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 MIGA1Q8NAN2 632 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 APPBP2Q92624 585 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 TMEM39BQ9GZU3 492 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 CREBZFQ9NS37 354 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 MYH1P12882 1939 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 SIPA1L1O43166 1804 aa17.47■□□□□ 0.39
CPSF1-206ENST00000531480 MAGEB6P1A0A0J9YX57 407 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 TMEM88BA6NKF7 163 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 CELF2O95319 508 aaKnown RBP17.46■□□□□ 0.39
CPSF1-206ENST00000531480 MAP3K11Q16584 847 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 ZMYM1Q5SVZ6 1142 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 PRAMEF18Q5VWM3 479 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms