RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 IFNL3Q8IZI9 196 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 AOPEPQ8N6M6 819 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 NAPBQ9H115 298 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 C4AP0C0L4 1744 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 C4BP0C0L5 1744 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 SLC3A2P08195 630 aaKnown RBP24.62■■□□□ 1.53
VPS28-205ENST00000526204 RASGRF1Q13972 1273 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 TMEM67Q5HYA8 995 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 KRT40Q6A162 431 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 UTP14AQ9BVJ6 771 aaKnown RBP24.62■■□□□ 1.53
VPS28-205ENST00000526204 LY9Q9HBG7 655 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 NEDD4P46934 1319 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 GNAT2P19087 354 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 IARSP41252 1262 aaKnown RBP24.62■■□□□ 1.53
VPS28-205ENST00000526204 TRIM29Q14134 588 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 PARP10Q53GL7 1025 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 SUSD4Q5VX71 490 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 VPS37DQ86XT2 251 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 MAGEB6Q8N7X4 407 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 TIGD1Q96MW7 591 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 PLCH1Q4KWH8 1693 aa24.62■■□□□ 1.53
VPS28-205ENST00000526204 PPP6R2O75170 966 aa24.61■■□□□ 1.53
VPS28-205ENST00000526204 CDC27P30260 824 aa24.61■■□□□ 1.53
VPS28-205ENST00000526204 GNL2Q13823 731 aaKnown RBP24.61■■□□□ 1.53
VPS28-205ENST00000526204 MICU3Q86XE3 530 aa24.61■■□□□ 1.53
VPS28-205ENST00000526204 CDCA7Q9BWT1 371 aaPredicted RBP24.61■■□□□ 1.53
VPS28-205ENST00000526204 KRT23Q9C075 422 aa24.61■■□□□ 1.53
VPS28-205ENST00000526204 CCDC87Q9NVE4 849 aa24.61■■□□□ 1.53
VPS28-205ENST00000526204 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.61■■□□□ 1.53
VPS28-205ENST00000526204 GOLGA8AA7E2F4 631 aa24.61■■□□□ 1.53
VPS28-205ENST00000526204 NTRK3Q16288 839 aa24.61■■□□□ 1.53
VPS28-205ENST00000526204 ARAP2Q8WZ64 1704 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 MBD4O95243 580 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 PFKFB1P16118 471 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 CCDC152Q4G0S7 254 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 NKX2-3Q8TAU0 364 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 ERCC4Q92889 916 aaPredicted RBP24.6■■□□□ 1.53
VPS28-205ENST00000526204 NACAP1Q9BZK3 213 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 EPB41L4AQ9HCS5 686 aaPredicted RBP24.6■■□□□ 1.53
VPS28-205ENST00000526204 SLC12A7Q9Y666 1083 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 STK36Q9NRP7 1315 aa24.6■■□□□ 1.53
VPS28-205ENST00000526204 U2AF2P26368 475 aaKnown RBP eCLIP24.59■■□□□ 1.53
VPS28-205ENST00000526204 NLRP12P59046 1061 aa24.59■■□□□ 1.53
VPS28-205ENST00000526204 AKNAD1Q5T1N1 836 aa24.59■■□□□ 1.53
VPS28-205ENST00000526204 INTS5Q6P9B9 1019 aaKnown RBP24.59■■□□□ 1.53
VPS28-205ENST00000526204 WASF1Q92558 559 aa24.59■■□□□ 1.53
VPS28-205ENST00000526204 AIFM3Q96NN9 605 aa24.59■■□□□ 1.53
VPS28-205ENST00000526204 ZSWIM5Q9P217 1185 aa24.59■■□□□ 1.53
VPS28-205ENST00000526204 A0A087WWV3 80 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 CCDC69A6NI79 296 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 IFIT3O14879 490 aaKnown RBP24.58■■□□□ 1.53
VPS28-205ENST00000526204 TPM4P67936 248 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 PHKBQ93100 1093 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 MTA3Q9BTC8 594 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 SENP2Q9HC62 589 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 RTL9Q8NET4 1388 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 PNPLA7Q6ZV29 1317 aa24.58■■□□□ 1.53
VPS28-205ENST00000526204 RIOK3O14730 519 aaKnown RBP24.58■■□□□ 1.52
VPS28-205ENST00000526204 WDHD1O75717 1129 aaPredicted RBP24.58■■□□□ 1.52
VPS28-205ENST00000526204 RXRAP19793 462 aa24.58■■□□□ 1.52
VPS28-205ENST00000526204 IGHMBP2P38935 993 aaKnown RBP24.58■■□□□ 1.52
VPS28-205ENST00000526204 GSDMDP57764 484 aa24.58■■□□□ 1.52
VPS28-205ENST00000526204 DPCR1Q3MIW9 517 aa24.58■■□□□ 1.52
VPS28-205ENST00000526204 MFSD6Q6ZSS7 791 aa24.58■■□□□ 1.52
VPS28-205ENST00000526204 FAM217BQ9NTX9 383 aaPredicted RBP24.58■■□□□ 1.52
VPS28-205ENST00000526204 IMPACTQ9P2X3 320 aa24.58■■□□□ 1.52
VPS28-205ENST00000526204 SMTNL1A8MU46 457 aa24.57■■□□□ 1.52
VPS28-205ENST00000526204 GSG1L2A8MUP6 293 aa24.57■■□□□ 1.52
VPS28-205ENST00000526204 SSRP1Q08945 709 aaKnown RBP24.57■■□□□ 1.52
VPS28-205ENST00000526204 SART3Q15020 963 aaKnown RBP24.57■■□□□ 1.52
VPS28-205ENST00000526204 ARMT1Q9H993 441 aa24.57■■□□□ 1.52
VPS28-205ENST00000526204 SYKP43405 635 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.56■■□□□ 1.52
VPS28-205ENST00000526204 PAXBP1Q9Y5B6 917 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 NID2Q14112 1375 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 SLIT2O94813 1529 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 FAM237AA0A1B0GTK4 181 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 MARCKSP29966 332 aaPredicted RBP24.56■■□□□ 1.52
VPS28-205ENST00000526204 CRKLP46109 303 aaKnown RBP24.56■■□□□ 1.52
VPS28-205ENST00000526204 PTPAQ15257 358 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 TPD52L1Q16890 204 aaPredicted RBP24.56■■□□□ 1.52
VPS28-205ENST00000526204 STAG1Q8WVM7 1258 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 C16orf45Q96MC5 204 aaPredicted RBP24.56■■□□□ 1.52
VPS28-205ENST00000526204 SEC31BQ9NQW1 1179 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 HPSEQ9Y251 543 aa24.56■■□□□ 1.52
VPS28-205ENST00000526204 FMNL1O95466 1100 aaPredicted RBP24.55■■□□□ 1.52
VPS28-205ENST00000526204 TNNT1P13805 278 aa24.55■■□□□ 1.52
VPS28-205ENST00000526204 IFNAR1P17181 557 aa24.55■■□□□ 1.52
VPS28-205ENST00000526204 CTDSPL2Q05D32 466 aa24.55■■□□□ 1.52
VPS28-205ENST00000526204 DHX8Q14562 1220 aaKnown RBP24.55■■□□□ 1.52
VPS28-205ENST00000526204 TMTC2Q8N394 836 aa24.55■■□□□ 1.52
VPS28-205ENST00000526204 FBXW7Q969H0 707 aa24.55■■□□□ 1.52
VPS28-205ENST00000526204 MAP3K14Q99558 947 aa24.55■■□□□ 1.52
VPS28-205ENST00000526204 RANBP6O60518 1105 aaKnown RBP24.55■■□□□ 1.52
VPS28-205ENST00000526204 SKILP12757 684 aa24.55■■□□□ 1.52
VPS28-205ENST00000526204 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.55■■□□□ 1.52
VPS28-205ENST00000526204 CTIFO43310 598 aaKnown RBP24.54■■□□□ 1.52
VPS28-205ENST00000526204 CAMTA2O94983 1202 aa24.54■■□□□ 1.52
VPS28-205ENST00000526204 ATP6V1AP38606 617 aa24.54■■□□□ 1.52
VPS28-205ENST00000526204 TDO2P48775 406 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms