RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CMA1P23946 247 aa20.82■□□□□ 0.92
VIM-206ENST00000487938 RBM6P78332 1123 aaKnown RBP20.82■□□□□ 0.92
VIM-206ENST00000487938 PPP4R3BQ5MIZ7 849 aa20.82■□□□□ 0.92
VIM-206ENST00000487938 NBPF11Q86T75 865 aa20.82■□□□□ 0.92
VIM-206ENST00000487938 VPS37DQ86XT2 251 aa20.82■□□□□ 0.92
VIM-206ENST00000487938 STRBPQ96SI9 672 aaKnown RBP20.82■□□□□ 0.92
VIM-206ENST00000487938 TRMT1Q9NXH9 659 aaKnown RBP20.82■□□□□ 0.92
VIM-206ENST00000487938 SMTNL1A8MU46 457 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 CTDSPL2Q05D32 466 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 GNL2Q13823 731 aaKnown RBP20.81■□□□□ 0.92
VIM-206ENST00000487938 SLC39A14Q15043 492 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 IGDCC4Q8TDY8 1250 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 MROH7-TTC4A0A0A0MT08 1334 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 NEMFO60524 1076 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 ARID4AP29374 1257 aaPredicted RBP20.81■□□□□ 0.92
VIM-206ENST00000487938 CCZ1BP86790 482 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 CCZ1P86791 482 aaPredicted RBP20.81■□□□□ 0.92
VIM-206ENST00000487938 DZIP3Q86Y13 1208 aaKnown RBP20.81■□□□□ 0.92
VIM-206ENST00000487938 UBN2Q6ZU65 1347 aa20.81■□□□□ 0.92
VIM-206ENST00000487938 CEP135Q66GS9 1140 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 PDCL2Q8N4E4 241 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 C4AP0C0L4 1744 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 C4BP0C0L5 1744 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 ZBTB43O43298 467 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 SMC2O95347 1197 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 NLRP12P59046 1061 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 TMEM67Q5HYA8 995 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 MAGEB6Q8N7X4 407 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 XPO4Q9C0E2 1151 aaKnown RBP20.8■□□□□ 0.92
VIM-206ENST00000487938 IFNKQ9P0W0 207 aa20.8■□□□□ 0.92
VIM-206ENST00000487938 CDKL5O76039 1030 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 UQCRFS1P1P0C7P4 283 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 PUM3Q15397 648 aaKnown RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 STK11IPQ8N1F8 1099 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 LPIN2Q92539 896 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 LY9Q9HBG7 655 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 ZSWIM5Q9P217 1185 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 TACC3Q9Y6A5 838 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 RANBP6O60518 1105 aaKnown RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 IARSP41252 1262 aaKnown RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 NAA30Q147X3 362 aaPredicted RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 CPLX2Q6PUV4 134 aaKnown RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 IFNL3Q8IZI9 196 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 SPATA5Q8NB90 893 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 ANKRD7Q92527 254 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 CLIC6Q96NY7 704 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 ARMT1Q9H993 441 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 EPB41L4AQ9HCS5 686 aaPredicted RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 FAM217BQ9NTX9 383 aaPredicted RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 PAXBP1Q9Y5B6 917 aa20.79■□□□□ 0.92
VIM-206ENST00000487938 DDX60Q8IY21 1712 aaKnown RBP20.79■□□□□ 0.92
VIM-206ENST00000487938 GOLGA8AA7E2F4 631 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 MBD4O95243 580 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 SYKP43405 635 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 NTRK3Q16288 839 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 CCDC112Q8NEF3 446 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 TMEM87BQ96K49 555 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 ATRNO75882 1429 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 PATL2C9JE40 543 aaKnown RBP20.78■□□□□ 0.92
VIM-206ENST00000487938 FGFR2P21802 821 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 SHC4Q6S5L8 630 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 BPIFA3Q9BQP9 254 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 NAPBQ9H115 298 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 ITGB4P16144 1822 aa20.78■□□□□ 0.92
VIM-206ENST00000487938 IFIT3O14879 490 aaKnown RBP20.77■□□□□ 0.92
VIM-206ENST00000487938 PRKAB2O43741 272 aa20.77■□□□□ 0.92
VIM-206ENST00000487938 CBX1P83916 185 aa20.77■□□□□ 0.92
VIM-206ENST00000487938 PTPN14Q15678 1187 aa20.77■□□□□ 0.92
VIM-206ENST00000487938 TMC6Q7Z403 805 aa20.77■□□□□ 0.92
VIM-206ENST00000487938 SLC26A6Q9BXS9 759 aa20.77■□□□□ 0.92
VIM-206ENST00000487938 SEC31BQ9NQW1 1179 aa20.77■□□□□ 0.92
VIM-206ENST00000487938 NCBP1Q09161 790 aaKnown RBP20.76■□□□□ 0.91
VIM-206ENST00000487938 RASGRF1Q13972 1273 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 NCAPHQ15003 741 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 PTPAQ15257 358 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 ZNF34Q8IZ26 560 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 ZKSCAN3Q9BRR0 538 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.76■□□□□ 0.91
VIM-206ENST00000487938 BCL9O00512 1426 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 LMOD1P29536 600 aaPredicted RBP20.76■□□□□ 0.91
VIM-206ENST00000487938 MAP3K14Q99558 947 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 MROH5Q6ZUA9 1318 aa20.76■□□□□ 0.91
VIM-206ENST00000487938 MYH3P11055 1940 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 A0A0G2JS52 829 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 TRIM29Q14134 588 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 RRP12Q5JTH9 1297 aaKnown RBP20.75■□□□□ 0.91
VIM-206ENST00000487938 SUSD4Q5VX71 490 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.75■□□□□ 0.91
VIM-206ENST00000487938 PRDM10Q9NQV6 1147 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 SLC12A7Q9Y666 1083 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 ERVV-1B6SEH8 477 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 SLC5A1P13866 664 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 GSDMDP57764 484 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 MAP3K12Q12852 859 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 PNOCQ13519 176 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 ALX1Q15699 326 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 CCAR2Q8N163 923 aaKnown RBP20.75■□□□□ 0.91
VIM-206ENST00000487938 OSBPL5Q9H0X9 879 aaPredicted RBP20.75■□□□□ 0.91
VIM-206ENST00000487938 TOMM22Q9NS69 142 aa20.75■□□□□ 0.91
VIM-206ENST00000487938 SPDYE4A6NLX3 237 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms