RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 UQCRFS1P1P0C7P4 283 aa20.95■□□□□ 0.94
CCM2-209ENST00000477605 CCAR2Q8N163 923 aaKnown RBP20.95■□□□□ 0.94
CCM2-209ENST00000477605 CGNQ9P2M7 1197 aaKnown RBP20.95■□□□□ 0.94
CCM2-209ENST00000477605 DPCR1Q3MIW9 517 aa20.95■□□□□ 0.94
CCM2-209ENST00000477605 UPF1Q92900 1129 aaKnown RBP eCLIP20.95■□□□□ 0.94
CCM2-209ENST00000477605 KIF28PB7ZC32 967 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 MYO1BO43795 1136 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 NRDCO43847 1150 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 PFKFB1P16118 471 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 ITGA6P23229 1130 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 METAP2P50579 478 aaKnown RBP eCLIP20.94■□□□□ 0.94
CCM2-209ENST00000477605 SLC9C2Q5TAH2 1124 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 NBPF11Q86T75 865 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 NLRP10Q86W26 655 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 ALG1Q9BT22 464 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 TBC1D2BQ9UPU7 963 aa20.94■□□□□ 0.94
CCM2-209ENST00000477605 CTSWP56202 376 aa20.93■□□□□ 0.94
CCM2-209ENST00000477605 ARID5BQ14865 1188 aa20.93■□□□□ 0.94
CCM2-209ENST00000477605 DNAJC10Q8IXB1 793 aa20.93■□□□□ 0.94
CCM2-209ENST00000477605 VGLL2Q8N8G2 317 aa20.93■□□□□ 0.94
CCM2-209ENST00000477605 NBPF3Q9H094 633 aa20.93■□□□□ 0.94
CCM2-209ENST00000477605 TUBE1Q9UJT0 475 aa20.93■□□□□ 0.94
CCM2-209ENST00000477605 ARID4AP29374 1257 aaPredicted RBP20.93■□□□□ 0.94
CCM2-209ENST00000477605 UTP14CQ5TAP6 766 aaKnown RBP20.93■□□□□ 0.94
CCM2-209ENST00000477605 ELOA2Q8IYF1 753 aaPredicted RBP20.93■□□□□ 0.94
CCM2-209ENST00000477605 HPSEQ9Y251 543 aa20.93■□□□□ 0.94
CCM2-209ENST00000477605 PSDA5PKW4 1024 aaPredicted RBP20.92■□□□□ 0.94
CCM2-209ENST00000477605 SGMS1Q86VZ5 419 aa20.92■□□□□ 0.94
CCM2-209ENST00000477605 CNNM1Q9NRU3 951 aa20.92■□□□□ 0.94
CCM2-209ENST00000477605 PDE8BO95263 885 aa20.92■□□□□ 0.94
CCM2-209ENST00000477605 APOA5Q6Q788 366 aa20.92■□□□□ 0.94
CCM2-209ENST00000477605 PI16Q6UXB8 463 aa20.92■□□□□ 0.94
CCM2-209ENST00000477605 KIF18AQ8NI77 898 aa20.92■□□□□ 0.94
CCM2-209ENST00000477605 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.92■□□□□ 0.94
CCM2-209ENST00000477605 SHANK3Q9BYB0 1731 aa20.91■□□□□ 0.94
CCM2-209ENST00000477605 STK36Q9NRP7 1315 aa20.91■□□□□ 0.94
CCM2-209ENST00000477605 U2AF2P26368 475 aaKnown RBP eCLIP20.91■□□□□ 0.94
CCM2-209ENST00000477605 SYKP43405 635 aa20.91■□□□□ 0.94
CCM2-209ENST00000477605 NCAPHQ15003 741 aa20.91■□□□□ 0.94
CCM2-209ENST00000477605 KRT40Q6A162 431 aa20.91■□□□□ 0.94
CCM2-209ENST00000477605 TBC1D10CQ8IV04 446 aa20.91■□□□□ 0.94
CCM2-209ENST00000477605 ERCC4Q92889 916 aaPredicted RBP20.91■□□□□ 0.94
CCM2-209ENST00000477605 GREM2Q9H772 168 aa20.91■□□□□ 0.94
CCM2-209ENST00000477605 A0A087WWV3 80 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 LIFRP42702 1097 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 EVA1CP58658 441 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 CYB5R4Q7L1T6 521 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 VPS37DQ86XT2 251 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 AK7Q96M32 723 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 CCDC85AQ96PX6 553 aaPredicted RBP20.9■□□□□ 0.94
CCM2-209ENST00000477605 ARID3AQ99856 593 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 XPO4Q9C0E2 1151 aaKnown RBP20.9■□□□□ 0.94
CCM2-209ENST00000477605 ZNF330Q9Y3S2 320 aaPredicted RBP20.9■□□□□ 0.94
CCM2-209ENST00000477605 USP27XA6NNY8 438 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 ZBTB43O43298 467 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 PDE8AO60658 829 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 CUTAO60888 179 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 WDHD1O75717 1129 aaPredicted RBP20.9■□□□□ 0.94
CCM2-209ENST00000477605 TRIM29Q14134 588 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 PTPAQ15257 358 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 IGDCC4Q8TDY8 1250 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 PIGBQ92521 554 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 PIH1D3Q9NQM4 214 aaKnown RBP20.9■□□□□ 0.94
CCM2-209ENST00000477605 IFNKQ9P0W0 207 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 C4AP0C0L4 1744 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 C4BP0C0L5 1744 aa20.9■□□□□ 0.94
CCM2-209ENST00000477605 CBFA2T2O43439 604 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 SMC2O95347 1197 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 PDE6AP16499 860 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 WASF1Q92558 559 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 STRBPQ96SI9 672 aaKnown RBP20.89■□□□□ 0.93
CCM2-209ENST00000477605 OGFRQ9NZT2 677 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 ZNF532Q9HCE3 1301 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 TCRBV5S4A2TA0A5A2 114 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 ERVV-1B6SEH8 477 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 IRS4O14654 1257 aaPredicted RBP20.89■□□□□ 0.93
CCM2-209ENST00000477605 CCP110O43303 1012 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 ONECUT3O60422 494 aaPredicted RBP20.89■□□□□ 0.93
CCM2-209ENST00000477605 APPP05067 770 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 SFPQP23246 707 aaKnown RBP eCLIP20.89■□□□□ 0.93
CCM2-209ENST00000477605 IARSP41252 1262 aaKnown RBP20.89■□□□□ 0.93
CCM2-209ENST00000477605 RESP18Q5W5W9 173 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 CCDC102BQ68D86 513 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 LPIN2Q92539 896 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 ERO1AQ96HE7 468 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 MAP3K14Q99558 947 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 GTPBP4Q9BZE4 634 aaKnown RBP20.89■□□□□ 0.93
CCM2-209ENST00000477605 CNNM2Q9H8M5 875 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 ASAP1Q9ULH1 1129 aa20.89■□□□□ 0.93
CCM2-209ENST00000477605 MROH5Q6ZUA9 1318 aa20.88■□□□□ 0.93
CCM2-209ENST00000477605 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.88■□□□□ 0.93
CCM2-209ENST00000477605 PATL2C9JE40 543 aaKnown RBP20.88■□□□□ 0.93
CCM2-209ENST00000477605 GNL2Q13823 731 aaKnown RBP20.88■□□□□ 0.93
CCM2-209ENST00000477605 NTRK3Q16288 839 aa20.88■□□□□ 0.93
CCM2-209ENST00000477605 ZNF592Q92610 1267 aa20.88■□□□□ 0.93
CCM2-209ENST00000477605 PKNOX2Q96KN3 472 aa20.88■□□□□ 0.93
CCM2-209ENST00000477605 MTA3Q9BTC8 594 aa20.88■□□□□ 0.93
CCM2-209ENST00000477605 GJB4Q9NTQ9 266 aa20.88■□□□□ 0.93
CCM2-209ENST00000477605 NID2Q14112 1375 aa20.88■□□□□ 0.93
CCM2-209ENST00000477605 IDH1O75874 414 aaKnown RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms