RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 AKNAD1Q5T1N1 836 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 ALDH1L1O75891 902 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 UTP14CQ5TAP6 766 aaKnown RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 NAPGQ99747 312 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 ZBTB3Q9H5J0 574 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 ARHGEF11O15085 1522 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 ABCC5O15440 1437 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 GOLGA6CA6NDK9 693 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 B4DLN1 442 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 GOLGA6DP0CG33 693 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 MRPL12P52815 198 aaKnown RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 EVCP57679 992 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 MYL5Q02045 173 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 PDE1CQ14123 709 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 DDX27Q96GQ7 796 aaKnown RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 PPP1R12CQ9BZL4 782 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 GOLGA6AQ9NYA3 693 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 TACC3Q9Y6A5 838 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 ACTN4O43707 911 aaKnown RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 BAG1Q99933 345 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 LLPHQ9BRT6 129 aaKnown RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 IFNKQ9P0W0 207 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 KDM5AP29375 1690 aaKnown RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 CCDC38Q502W7 563 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 C8orf74Q6P047 294 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 IFT20Q8IY31 132 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 ARHGEF2Q92974 986 aaKnown RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 CUL4BQ13620 913 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 EPB41P11171 864 aaKnown RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 GNAT2P19087 354 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 CNGA1P29973 690 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 MTMR3Q13615 1198 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 GABPAQ06546 454 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 SRGAP1Q7Z6B7 1085 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 NDUFAB1O14561 156 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 SPOPO43791 374 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 WDR44Q5JSH3 913 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 PPP1R21Q6ZMI0 780 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 CACYBPQ9HB71 228 aaKnown RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 PLCB1Q9NQ66 1216 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 CCT6AP40227 531 aaKnown RBP8.17□□□□□ -1.1
SYNE1-208ENST00000367256 TMCO4Q5TGY1 634 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 HS2ST1Q7LGA3 356 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 TCHPQ9BT92 498 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 MYO10Q9HD67 2058 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 TNNI2P48788 182 aa8.17□□□□□ -1.1
SYNE1-208ENST00000367256 MBIPQ9NS73 344 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 PPP2R5EQ16537 467 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 MCMDC2Q4G0Z9 681 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 LIN9Q5TKA1 542 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 SYT10Q6XYQ8 523 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 IGHDP01880 384 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 BRD3Q15059 726 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 SDCCAG8Q86SQ7 713 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-208ENST00000367256 IQUBQ8NA54 791 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 ARHGAP6O43182 974 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 RHPN1Q8TCX5 695 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 PRPF31Q8WWY3 499 aaKnown RBP8.16□□□□□ -1.1
SYNE1-208ENST00000367256 FAM204AQ9H8W3 233 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 LEO1Q8WVC0 666 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-208ENST00000367256 ZNF622Q969S3 477 aaKnown RBP eCLIP8.16□□□□□ -1.1
SYNE1-208ENST00000367256 SIRT1Q96EB6 747 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 NOX5Q96PH1 765 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 STX10O60499 249 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 PPFIA4O75335 1185 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 CYP7A1P22680 504 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 CYP26C1Q6V0L0 522 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 PAG1Q9NWQ8 432 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 PICALMQ13492 652 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 RSPH3Q86UC2 560 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 GABPB2Q8TAK5 448 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-208ENST00000367256 VCX3AQ9NNX9 186 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 RPL13P26373 211 aaKnown RBP8.16□□□□□ -1.1
SYNE1-208ENST00000367256 KRT79Q5XKE5 535 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 MAPKBP1O60336 1514 aa8.16□□□□□ -1.1
SYNE1-208ENST00000367256 MED4Q9NPJ6 270 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 GOLGA6BA6NDN3 693 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 ATP5J2-PTCD1G3V325 749 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 SLC8A3P57103 927 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 GBP5Q96PP8 586 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 RASSF2P50749 326 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 LDHAL6AQ6ZMR3 332 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 MRRFQ96E11 262 aaKnown RBP8.15□□□□□ -1.1
SYNE1-208ENST00000367256 NAP1L4Q99733 375 aaKnown RBP8.15□□□□□ -1.1
SYNE1-208ENST00000367256 RBM8AQ9Y5S9 174 aaKnown RBP8.15□□□□□ -1.1
SYNE1-208ENST00000367256 ZBTB21Q9ULJ3 1066 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 LUC7L3O95232 432 aaKnown RBP8.15□□□□□ -1.1
SYNE1-208ENST00000367256 PRR16Q569H4 304 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 NUP58Q9BVL2 599 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 BCAP29Q9UHQ4 241 aa8.15□□□□□ -1.1
SYNE1-208ENST00000367256 GIPC1O14908 333 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 IRX4P78413 519 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 BIRC3Q13489 604 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 RNF168Q8IYW5 571 aaPredicted RBP8.15□□□□□ -1.11
SYNE1-208ENST00000367256 EMILIN1Q9Y6C2 1016 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 NME9Q86XW9 330 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 KRT9P35527 623 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 STX17P56962 302 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 PSMD6Q15008 389 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 TMTC1Q8IUR5 882 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms