RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 ME1P48163 572 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 EIF5P55010 431 aaKnown RBP15.07■□□□□ 0
CPSF6-201ENST00000266679 TRDNQ13061 729 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 UBE3CQ15386 1083 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 INTS5Q6P9B9 1019 aaKnown RBP15.07■□□□□ 0
CPSF6-201ENST00000266679 CRKLP46109 303 aaKnown RBP15.06■□□□□ 0
CPSF6-201ENST00000266679 ATL3Q6DD88 541 aa15.06■□□□□ 0
CPSF6-201ENST00000266679 CYB5R4Q7L1T6 521 aa15.06■□□□□ 0
CPSF6-201ENST00000266679 FSIP1Q8NA03 581 aa15.06■□□□□ 0
CPSF6-201ENST00000266679 PIBF1Q8WXW3 757 aa15.06■□□□□ 0
CPSF6-201ENST00000266679 SEC31BQ9NQW1 1179 aa15.06■□□□□ 0
CPSF6-201ENST00000266679 WDR19Q8NEZ3 1342 aa15.06■□□□□ 0
CPSF6-201ENST00000266679 TCRBV5S4A2TA0A5A2 114 aa15.05■□□□□ 0
CPSF6-201ENST00000266679 DHX16O60231 1041 aaKnown RBP15.05■□□□□ 0
CPSF6-201ENST00000266679 ATP6V1AP38606 617 aa15.05■□□□□ 0
CPSF6-201ENST00000266679 AIDAQ96BJ3 306 aa15.05■□□□□ 0
CPSF6-201ENST00000266679 UTP14AQ9BVJ6 771 aaKnown RBP15.05■□□□□ 0
CPSF6-201ENST00000266679 GJB4Q9NTQ9 266 aa15.05■□□□□ 0
CPSF6-201ENST00000266679 MYH14Q7Z406 1995 aaKnown RBP15.05■□□□□ -0
CPSF6-201ENST00000266679 SPATA5Q8NB90 893 aa15.05■□□□□ -0
CPSF6-201ENST00000266679 MPHOSPH8Q99549 860 aa15.05■□□□□ -0
CPSF6-201ENST00000266679 KCNF1Q9H3M0 494 aa15.05■□□□□ -0
CPSF6-201ENST00000266679 NEDD4P46934 1319 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 B4E1Z4 1266 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 ZNF165P49910 485 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 MAGEB6Q8N7X4 407 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 LINC00116Q8NCU8 138 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 TDRD7Q8NHU6 1098 aaKnown RBP15.04■□□□□ -0
CPSF6-201ENST00000266679 TAOK2Q9UL54 1235 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 ZMYM6O95789 1325 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 GOLGA6L6A8MZA4 724 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 SH2B2O14492 632 aaPredicted RBP15.04■□□□□ -0
CPSF6-201ENST00000266679 KINO60870 393 aaKnown RBP15.04■□□□□ -0
CPSF6-201ENST00000266679 POLR3DP05423 398 aaPredicted RBP15.04■□□□□ -0
CPSF6-201ENST00000266679 RXRAP19793 462 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 TERF1P54274 439 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 RASGRF1Q13972 1273 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 DNTTIP2Q5QJE6 756 aaKnown RBP15.04■□□□□ -0
CPSF6-201ENST00000266679 AK7Q96M32 723 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 STRBPQ96SI9 672 aaKnown RBP15.04■□□□□ -0
CPSF6-201ENST00000266679 ANGEL1Q9UNK9 670 aaKnown RBP15.04■□□□□ -0
CPSF6-201ENST00000266679 CLIC4Q9Y696 253 aa15.04■□□□□ -0
CPSF6-201ENST00000266679 UQCRHLA0A096LP55 91 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 LOC102724428A0A0B4J2F2 783 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 CAMTA2O94983 1202 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 MBD4O95243 580 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 UQCRHP07919 91 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 SIK1P57059 783 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 FAM160A1Q05DH4 1040 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 ITPK1Q13572 414 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 SNW1Q13573 536 aaKnown RBP15.03■□□□□ -0
CPSF6-201ENST00000266679 NOLC1Q14978 699 aaKnown RBP eCLIP15.03■□□□□ -0
CPSF6-201ENST00000266679 STK38Q15208 465 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 C11orf57Q6ZUT1 292 aaPredicted RBP15.03■□□□□ -0
CPSF6-201ENST00000266679 SMARCC1Q92922 1105 aaPredicted RBP15.03■□□□□ -0
CPSF6-201ENST00000266679 SENP2Q9HC62 589 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 RTEL1Q9NZ71 1219 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 PCDHA7Q9UN72 937 aa15.03■□□□□ -0
CPSF6-201ENST00000266679 KIF28PB7ZC32 967 aa15.02■□□□□ -0
CPSF6-201ENST00000266679 CTAGE5O15320 804 aa15.02■□□□□ -0
CPSF6-201ENST00000266679 METAP2P50579 478 aaKnown RBP eCLIP15.02■□□□□ -0
CPSF6-201ENST00000266679 STX1AQ16623 288 aa15.02■□□□□ -0
CPSF6-201ENST00000266679 FBXO18Q8NFZ0 1043 aa15.02■□□□□ -0
CPSF6-201ENST00000266679 MRPS27Q92552 414 aaKnown RBP15.02■□□□□ -0
CPSF6-201ENST00000266679 EPB41L4AQ9HCS5 686 aaPredicted RBP15.02■□□□□ -0
CPSF6-201ENST00000266679 INCENPQ9NQS7 918 aa15.02■□□□□ -0
CPSF6-201ENST00000266679 PYCARDQ9ULZ3 195 aa15.02■□□□□ -0
CPSF6-201ENST00000266679 COL5A3P25940 1745 aaPredicted RBP15.02■□□□□ -0
CPSF6-201ENST00000266679 COL4A1P02462 1669 aa15.02■□□□□ -0
CPSF6-201ENST00000266679 BCORQ6W2J9 1755 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 A0A087WWV3 80 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 ZNF75DP51815 510 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 SF3A1Q15459 793 aaKnown RBP15.02□□□□□ -0.01
CPSF6-201ENST00000266679 CCDC144CPQ8IYA2 1237 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 ENGASEQ8NFI3 743 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 SLC16A10Q8TF71 515 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 TRIM5Q9C035 493 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 ARMT1Q9H993 441 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 NIP7Q9Y221 180 aaKnown RBP eCLIP15.02□□□□□ -0.01
CPSF6-201ENST00000266679 TIAM2Q8IVF5 1701 aa15.02□□□□□ -0.01
CPSF6-201ENST00000266679 TPM3P06753 285 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 PTGS1P23219 599 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 YY1P25490 414 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 POLD1P28340 1107 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 CTDSPL2Q05D32 466 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 MAP3K12Q12852 859 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 CCDC152Q4G0S7 254 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 MICU3Q86XE3 530 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 DRC7Q8IY82 874 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 NLGN2Q8NFZ4 835 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 AIFM3Q96NN9 605 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 CICQ96RK0 1608 aaPredicted RBP15.01□□□□□ -0.01
CPSF6-201ENST00000266679 NTSR2O95665 410 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 IGHMBP2P38935 993 aaKnown RBP15.01□□□□□ -0.01
CPSF6-201ENST00000266679 KIF23Q02241 960 aaPredicted RBP15.01□□□□□ -0.01
CPSF6-201ENST00000266679 PARP10Q53GL7 1025 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 MYSM1Q5VVJ2 828 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 APOA5Q6Q788 366 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 NFXL1Q6ZNB6 911 aa15.01□□□□□ -0.01
CPSF6-201ENST00000266679 LINC00301Q8NCQ3 95 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms