RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 U2AF2P26368 475 aaKnown RBP eCLIP21.67■■□□□ 1.062e-7■■□□□ 14.5
CPSF3-201ENST00000238112 SYKP43405 635 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 NFXL1Q6ZNB6 911 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 TMC6Q7Z403 805 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 MICU3Q86XE3 530 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 TMEM87BQ96K49 555 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 TIGD1Q96MW7 591 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 KCND1Q9NSA2 647 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 B4E1Z4 1266 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 PDE8BO95263 885 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 TRIM29Q14134 588 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 VGLL2Q8N8G2 317 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 C4AP0C0L4 1744 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 C4BP0C0L5 1744 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 TOGARAM1Q9Y4F4 1720 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 SOS2Q07890 1332 aaPredicted RBP21.66■■□□□ 1.06
CPSF3-201ENST00000238112 ZBTB43O43298 467 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 PPP6R2O75170 966 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 PDE6AP16499 860 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 DHX8Q14562 1220 aaKnown RBP21.66■■□□□ 1.06
CPSF3-201ENST00000238112 CCDC102BQ68D86 513 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 PHKBQ93100 1093 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 AIDAQ96BJ3 306 aa21.66■■□□□ 1.06
CPSF3-201ENST00000238112 TRMT112Q9UI30 125 aaKnown RBP21.66■■□□□ 1.06
CPSF3-201ENST00000238112 KIF2AO00139 706 aaPredicted RBP21.65■■□□□ 1.06
CPSF3-201ENST00000238112 NRDCO43847 1150 aa21.65■■□□□ 1.06
CPSF3-201ENST00000238112 UQCRFS1P1P0C7P4 283 aa21.65■■□□□ 1.06
CPSF3-201ENST00000238112 CGNQ9P2M7 1197 aaKnown RBP21.65■■□□□ 1.06
CPSF3-201ENST00000238112 SPDYE4A6NLX3 237 aa21.64■■□□□ 1.06
CPSF3-201ENST00000238112 SFPQP23246 707 aaKnown RBP eCLIP21.64■■□□□ 1.06
CPSF3-201ENST00000238112 CDC27P30260 824 aa21.64■■□□□ 1.06
CPSF3-201ENST00000238112 PHKA1P46020 1223 aa21.64■■□□□ 1.06
CPSF3-201ENST00000238112 KIF18AQ8NI77 898 aa21.64■■□□□ 1.06
CPSF3-201ENST00000238112 GOLGA8AA7E2F4 631 aa21.64■■□□□ 1.05
CPSF3-201ENST00000238112 ARID4AP29374 1257 aaPredicted RBP21.64■■□□□ 1.05
CPSF3-201ENST00000238112 IARSP41252 1262 aaKnown RBP21.64■■□□□ 1.05
CPSF3-201ENST00000238112 FEZ1Q99689 392 aa21.64■■□□□ 1.05
CPSF3-201ENST00000238112 IKBKBO14920 756 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 NCAPHQ15003 741 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 TMEM67Q5HYA8 995 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 NKX2-3Q8TAU0 364 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 WWC3Q9ULE0 1092 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 AKAP11Q9UKA4 1901 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 ISM2Q6H9L7 571 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 SENP2Q9HC62 589 aa21.63■■□□□ 1.05
CPSF3-201ENST00000238112 PDE8AO60658 829 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 LMOD1P29536 600 aaPredicted RBP21.62■■□□□ 1.05
CPSF3-201ENST00000238112 NAA30Q147X3 362 aaPredicted RBP21.62■■□□□ 1.05
CPSF3-201ENST00000238112 PUM3Q15397 648 aaKnown RBP21.62■■□□□ 1.05
CPSF3-201ENST00000238112 IGDCC4Q8TDY8 1250 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 STRBPQ96SI9 672 aaKnown RBP21.62■■□□□ 1.05
CPSF3-201ENST00000238112 HPSEQ9Y251 543 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 PTPAQ15257 358 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 ARMCX5Q6P1M9 558 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 SHC4Q6S5L8 630 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 LY9Q9HBG7 655 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 TUBE1Q9UJT0 475 aa21.62■■□□□ 1.05
CPSF3-201ENST00000238112 TCRBV5S4A2TA0A5A2 114 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 FANCCQ00597 558 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 SGMS1Q86VZ5 419 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 LPIN2Q92539 896 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 ALX1Q15699 326 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 MAP3K14Q99558 947 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 NAPBQ9H115 298 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 SLC12A7Q9Y666 1083 aa21.61■■□□□ 1.05
CPSF3-201ENST00000238112 NTRK3Q16288 839 aa21.6■■□□□ 1.05
CPSF3-201ENST00000238112 MYL10Q9BUA6 226 aa21.6■■□□□ 1.05
CPSF3-201ENST00000238112 SLAIN2Q9P270 581 aa21.6■■□□□ 1.05
CPSF3-201ENST00000238112 ZNF215Q9UL58 517 aaPredicted RBP21.6■■□□□ 1.05
CPSF3-201ENST00000238112 PATL2C9JE40 543 aaKnown RBP21.6■■□□□ 1.05
CPSF3-201ENST00000238112 IFIT3O14879 490 aaKnown RBP21.6■■□□□ 1.05
CPSF3-201ENST00000238112 CUTAO60888 179 aa21.6■■□□□ 1.05
CPSF3-201ENST00000238112 SSRP1Q08945 709 aaKnown RBP21.6■■□□□ 1.05
CPSF3-201ENST00000238112 RESP18Q5W5W9 173 aa21.6■■□□□ 1.05
CPSF3-201ENST00000238112 E4F1Q66K89 784 aaPredicted RBP21.6■■□□□ 1.05
CPSF3-201ENST00000238112 SLC26A6Q9BXS9 759 aa21.6■■□□□ 1.05
CPSF3-201ENST00000238112 UBN2Q6ZU65 1347 aa21.59■■□□□ 1.05
CPSF3-201ENST00000238112 MROH5Q6ZUA9 1318 aa21.59■■□□□ 1.05
CPSF3-201ENST00000238112 PSDA5PKW4 1024 aaPredicted RBP21.59■■□□□ 1.05
CPSF3-201ENST00000238112 RANBP6O60518 1105 aaKnown RBP21.59■■□□□ 1.05
CPSF3-201ENST00000238112 CYP19A1P11511 503 aaPredicted RBP21.59■■□□□ 1.05
CPSF3-201ENST00000238112 ZSCAN20P17040 1043 aaPredicted RBP21.59■■□□□ 1.05
CPSF3-201ENST00000238112 LIFRP42702 1097 aa21.59■■□□□ 1.05
CPSF3-201ENST00000238112 MYL5Q02045 173 aa21.59■■□□□ 1.05
CPSF3-201ENST00000238112 MAP3K12Q12852 859 aa21.59■■□□□ 1.05
CPSF3-201ENST00000238112 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.59■■□□□ 1.05
CPSF3-201ENST00000238112 BCL11BQ9C0K0 894 aaPredicted RBP21.59■■□□□ 1.05
CPSF3-201ENST00000238112 FAM237AA0A1B0GTK4 181 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 CBFA2T2O43439 604 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 KCNJ6P48051 423 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 PNOCQ13519 176 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 OLFM4Q6UX06 510 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 IFNL3Q8IZI9 196 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 SPATA5Q8NB90 893 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 HELBQ8NG08 1087 aaPredicted RBP21.58■■□□□ 1.05
CPSF3-201ENST00000238112 WASF1Q92558 559 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 ERO1AQ96HE7 468 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 PPP1R13BQ96KQ4 1090 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 CLIC6Q96NY7 704 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 CNNM2Q9H8M5 875 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms