RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 SRIP30626 198 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 GABRA2P47869 451 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 C3orf56Q8N813 242 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 LINC01006Q8NI28 216 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 ZFAND1Q8TCF1 268 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 TMEM230Q96A57 120 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 GTSF1LQ9H1H1 148 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 MRPL16Q9NX20 251 aaKnown RBP4.06□□□□□ -1.76
CCDC39-205ENST00000485055 CUBNO60494 3623 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 ROS1P08922 2347 aa4.06□□□□□ -1.76
CCDC39-205ENST00000485055 TRAV40A0A0B4J280 105 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 A0A0G2JRQ6 117 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 GAGE12BA1L429 117 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 GAGE12HA6NDE8 117 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 FAM183AA6NL82 134 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 TMEM212A6NML5 194 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 A8MWP6 167 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 MGST3O14880 152 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 IGLV1-47P01700 117 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 IGHV1-8P0DP01 117 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 SLC2A2P11168 524 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-205ENST00000485055 KRTAP10-3P60369 221 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 Q6P435 159 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 TCF23Q7RTU1 214 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 WFDC9Q8NEX5 89 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 IL1F10Q8WWZ1 152 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 C1QTNF4Q9BXJ3 329 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 SH3BGRL3Q9H299 93 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 SCN3BQ9NY72 215 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 TVP23BQ9NYZ1 205 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 IGKV1-27A0A075B6S5 117 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 TMEM218A2RU14 115 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 DUS4LO95620 317 aaKnown RBP4.05□□□□□ -1.76
CCDC39-205ENST00000485055 EGR2P11161 476 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-205ENST00000485055 MRPS10P82664 201 aaKnown RBP4.05□□□□□ -1.76
CCDC39-205ENST00000485055 RPL24P83731 157 aaKnown RBP4.05□□□□□ -1.76
CCDC39-205ENST00000485055 DHRS2Q13268 280 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 TTC32Q5I0X7 151 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 HEPN1Q6WQI6 88 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 ZNF826PQ6ZT77 177 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 SLC35G3Q8N808 338 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 ORAOV1Q8WV07 137 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 MRPS24Q96EL2 167 aaKnown RBP4.05□□□□□ -1.76
CCDC39-205ENST00000485055 CCL13Q99616 98 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 RNF126Q9BV68 326 aa4.05□□□□□ -1.76
CCDC39-205ENST00000485055 IGKV1-9A0A0C4DH69 117 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 C9orf118A6NHY6 69 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 MMP23AO75900 390 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 OR5G3P0C626 314 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 FRMD6-AS1P0C7T7 363 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 PFN2P35080 140 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 RPS25P62851 125 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 REG3AQ06141 175 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ATP5L2Q7Z4Y8 100 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 NDUFA11Q86Y39 141 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 C9orf85Q96MD7 179 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 LINC01587Q99440 93 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 HSD17B10Q99714 261 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 RSL24D1Q9UHA3 163 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 TRAV26-2A0A0B4J265 109 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 A0A0U1RQV1 116 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 A0A1B0GX51 115 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 APOA2P02652 100 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ZNF728P0DKX0 622 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 SLC38A11Q08AI6 406 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ZNF816Q0VGE8 651 aaPredicted RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 DAZ2Q13117 558 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 CENPWQ5EE01 88 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 TMEM236Q5W0B7 351 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 RPL22L1Q6P5R6 122 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 TREML4Q6UXN2 200 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 DAZ4Q86SG3 579 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 C8orf59Q8N0T1 100 aaPredicted RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ACBD7Q8N6N7 88 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 FAM216BQ8N7L0 139 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ISOC1Q96CN7 298 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 RERGLQ9H628 205 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 DAZ1Q9NQZ3 744 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 DAZ3Q9NR90 486 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 CALYQ9NYX4 217 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 RBM12B-AS1Q9P1G2 102 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 TET2Q6N021 2002 aaPredicted RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 TRAV8-2A0A0B4J237 113 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ATP6V0E1O15342 81 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 OR2A4O95047 310 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 CXorf1O96002 111 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 IGLV1-40P01703 118 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 RPS27P42677 84 aaKnown RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 CRIP2P52943 208 aaPredicted RBP4.04□□□□□ -1.76
CCDC39-205ENST00000485055 Q6ZPA2 131 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 DEFB125Q8N687 156 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ZNF114Q8NC26 417 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 OR2A7Q96R45 310 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 SLC25A31Q9H0C2 315 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 ZNF702PQ9H963 129 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 MTORP42345 2549 aa4.04□□□□□ -1.76
CCDC39-205ENST00000485055 TRBV6-6A0A0A6YYG2 114 aa4.03□□□□□ -1.76
CCDC39-205ENST00000485055 IGHV4-28A0A0C4DH34 117 aa4.03□□□□□ -1.76
CCDC39-205ENST00000485055 RBFOX2O43251 390 aaKnown RBP eCLIP4.03□□□□□ -1.76
CCDC39-205ENST00000485055 MRPS14O60783 128 aaKnown RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms