RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 FKBP1CQ5VVH2 108 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 ADAMTSL5Q6ZMM2 481 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 Q6ZS49 121 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 BAGE3Q86Y29 109 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 BAGE2Q86Y30 109 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 BPIFA4PQ86YQ2 179 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 VKORC1L1Q8N0U8 176 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.65□□□□□ -1.99
VPS35-203ENST00000562420 CYB561D1Q8N8Q1 229 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 Q8N976 141 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 GATD1Q8NB37 220 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 OR8B3Q8NGG8 313 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 OR1L8Q8NGR8 309 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 OR10G6Q8NH81 332 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 RPS4Y2Q8TD47 263 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 GTSF1Q8WW33 167 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 PPDPFLQ8WWR9 84 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 BAALCQ8WXS3 180 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 C1orf147Q96MC9 270 aaPredicted RBP2.65□□□□□ -1.99
VPS35-203ENST00000562420 LINC01600Q96MT4 127 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 OR8B2Q96RD0 313 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 RASL11BQ9BPW5 248 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 RPP25Q9BUL9 199 aaKnown RBP2.65□□□□□ -1.99
VPS35-203ENST00000562420 OCR1Q9BZK8 76 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 SLC39A9Q9NUM3 307 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 THYN1Q9P016 225 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 HIGD1BQ9P298 99 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 NEUROG3Q9Y4Z2 214 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 LRRC37AA6NMS7 1700 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 TRBV20-1A0A075B6N2 111 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 TEX50A0A1B0GTY4 177 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 ODAMA1E959 279 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 ZNF850A8MQ14 1090 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 FOXI3A8MTJ6 420 aaPredicted RBP2.64□□□□□ -1.99
VPS35-203ENST00000562420 NDUFC2-KCTD14E9PQ53 114 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 SYS1-DBNDD2H3BUS1 97 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 J3QLI3 93 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 M0R2P5 195 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 ENSAO43768 121 aaKnown RBP2.64□□□□□ -1.99
VPS35-203ENST00000562420 SNCGO76070 127 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 HLA-DQA1P01909 254 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 COX8AP10176 69 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 BCL2P10415 239 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 SLC25A6P12236 298 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 GLRXP35754 106 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 MAGEA5P43359 124 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 PSMB3P49720 205 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 CAV3P56539 151 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 KRTAP10-3P60369 221 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 KRTDAPP60985 99 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 PPP1CBP62140 327 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 GNB2P62879 340 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 DYNLT1P63172 113 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 UNC119Q13432 240 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 C1orf61Q13536 156 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 FAM53BQ14153 422 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 CD226Q15762 336 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 IGFBP7Q16270 282 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 RRN3P1Q2M238 152 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 CEACAM16Q2WEN9 425 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 LCN12Q6JVE5 192 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 Q6ZR54 194 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 LINC00336Q6ZUF6 198 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 TMEM150AQ86TG1 271 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 ZNF584Q8IVC4 421 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 ATOH7Q8N100 152 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 C1orf158Q8N1D5 194 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 TMEM86AQ8N2M4 240 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 C15orf53Q8NAA6 179 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 OR4C13Q8NGP0 309 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 MYOZ3Q8TDC0 251 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 DNAJA3Q96EY1 480 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 LINC00526Q96FQ7 95 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 SEC22AQ96IW7 307 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 KCNS1Q96KK3 526 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 KIR2DL4Q99706 377 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 CHCHD5Q9BSY4 110 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 HCAR1Q9BXC0 346 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 HES7Q9BYE0 225 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 C5orf66Q9H5L9 145 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 NAA60Q9H7X0 242 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 CLCF1Q9UBD9 225 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 PCTPQ9UKL6 214 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 OARD1Q9Y530 152 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 A0A0G2JMZ2 1700 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 LRRC37A2A6NM11 1700 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 FER1L5A0AVI2 2057 aa2.64□□□□□ -1.99
VPS35-203ENST00000562420 SCN8AQ9UQD0 1980 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 CHD3Q12873 2000 aaKnown RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 TNS1Q9HBL0 1735 aaKnown RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 MUC21A0A0G2JKD1 596 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 MUC21A0A140T8X8 626 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 SHISA9B4DS77 424 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 EEF1E1-BLOC1S5C9J1V9 151 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 J3QLW9 94 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 SSSCA1O60232 199 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 OR1I1O60431 355 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 SERF1AO75920 110 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 DPM2O94777 84 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms