RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SIGLEC1Q9BZZ2 1709 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 LINC01549A6NIU2 74 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 FXYD7P58549 80 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 GNG5P63218 68 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 ZNF660Q6AZW8 331 aaPredicted RBP5.97□□□□□ -1.45
UPF2-203ENST00000397053 PLPPR1Q8TBJ4 325 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 MSRB2Q9Y3D2 182 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 IGLV3-19P01714 112 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 CLPSP04118 112 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 NMBP08949 121 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 FOXF2Q12947 444 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 KLRD1Q13241 179 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 SS18Q15532 418 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 CD300EQ496F6 205 aaPredicted RBP5.97□□□□□ -1.45
UPF2-203ENST00000397053 RASL11AQ6T310 242 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 C14orf144Q96I85 54 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 BPESC1Q9GZL8 116 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 IGHV2-26A0A0B4J1V2 119 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 GZMBP10144 247 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 ATP5G3P48201 142 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 ZFP36L1Q07352 338 aaKnown RBP5.97□□□□□ -1.45
UPF2-203ENST00000397053 RASL10AQ92737 203 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 EPDR1Q9UM22 224 aa5.97□□□□□ -1.45
UPF2-203ENST00000397053 F2Z2F3 143 aa5.96□□□□□ -1.45
UPF2-203ENST00000397053 C1QCP02747 245 aa5.96□□□□□ -1.45
UPF2-203ENST00000397053 ZFHX2Q9C0A1 2572 aaPredicted RBP5.96□□□□□ -1.46
UPF2-203ENST00000397053 TRAV13-1A0A0B4J241 112 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 ATXN8Q156A1 80 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 C9orf139Q6ZV77 190 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 USMG5Q96IX5 58 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 DEPPQ9NTK1 212 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 RPUSD1Q9UJJ7 312 aaKnown RBP5.96□□□□□ -1.46
UPF2-203ENST00000397053 A0A1B0GV72 72 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 M0R2P5 195 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 DPM2O94777 84 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 PYYP10082 97 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 ST6GALNAC6Q969X2 333 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 IMMP2LQ96T52 175 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 WFDC6Q9BQY6 131 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 PRDM13Q9H4Q3 707 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 KDM3BQ7LBC6 1761 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 MCM3APO60318 1980 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 GLI3P10071 1580 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 TRAV9-2A0A087WT02 112 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 IGKV1D-43A0A0B4J1Z2 117 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 SYNJ2BPP57105 145 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 RPL15P61313 204 aaKnown RBP5.96□□□□□ -1.46
UPF2-203ENST00000397053 ERCC8Q13216 396 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 MAPK1IP1LQ8NDC0 245 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 TM2D1Q9BX74 207 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 NHP2Q9NX24 153 aaKnown RBP5.96□□□□□ -1.46
UPF2-203ENST00000397053 SPRR3Q9UBC9 169 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 SPCS1Q9Y6A9 102 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 FER1L5A0AVI2 2057 aa5.96□□□□□ -1.46
UPF2-203ENST00000397053 PSG1P11464 419 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 DMRTA1Q5VZB9 504 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 HEPN1Q6WQI6 88 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 OTOGLQ3ZCN5 2332 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 CACNA1SQ13698 1873 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 IGLV3-12A0A075B6K2 115 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 EVI2AP22794 236 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 DEFB131AP59861 70 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 CD300CQ08708 224 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 C10orf55Q5SWW7 151 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 TPTE2P1Q5T6R2 138 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 TEX43Q6ZNM6 134 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 PQLC2LA1A4F0 135 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 IZUMO1RA6ND01 250 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 TFF1P04155 84 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 NDPQ00604 133 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 CR1LQ2VPA4 569 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 FAM19A2Q8N3H0 131 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 RMI2Q96E14 147 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 Q96MF0 132 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 SPOCK3Q9BQ16 436 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 MCRIP2Q9BUT9 160 aaKnown RBP5.95□□□□□ -1.46
UPF2-203ENST00000397053 CHTOPQ9Y3Y2 248 aaKnown RBP5.95□□□□□ -1.46
UPF2-203ENST00000397053 NRAPQ86VF7 1730 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 IGHV1-8P0DP01 117 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 SRSF4Q08170 494 aaKnown RBP5.95□□□□□ -1.46
UPF2-203ENST00000397053 LCN12Q6JVE5 192 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 ZNF525Q8N782 197 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 RHPN1-AS1Q9BWJ2 59 aa5.95□□□□□ -1.46
UPF2-203ENST00000397053 TRBV6-7A0A0A0MS04 114 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 VWC2LB2RUY7 222 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 OVOL3O00110 214 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 NDUFS8O00217 210 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 MSMBP08118 114 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 GATA3P23771 443 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 HOXD3P31249 432 aaPredicted RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 C5orf64Q2M2E5 130 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 SUMO4Q6EEV6 95 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 SLC25A39Q9BZJ4 359 aaPredicted RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 NEUROG3Q9Y4Z2 214 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 SCN2AQ99250 2005 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 DOCK9Q9BZ29 2069 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 A0A1W2PRE2 83 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 ZNF98A6NK75 572 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 PMS2P5A8MQ11 134 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 TMEM238C9JI98 176 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms