RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 TRAM1Q15629 374 aa6.5□□□□□ -1.37
COL17A1-207ENST00000488320 TTC32Q5I0X7 151 aa6.5□□□□□ -1.37
COL17A1-207ENST00000488320 OGFRL1Q5TC84 451 aaPredicted RBP6.5□□□□□ -1.37
COL17A1-207ENST00000488320 HACD4Q5VWC8 232 aa6.5□□□□□ -1.37
COL17A1-207ENST00000488320 C10orf67Q8IYJ2 551 aa6.5□□□□□ -1.37
COL17A1-207ENST00000488320 NUDCD2Q8WVJ2 157 aa6.5□□□□□ -1.37
COL17A1-207ENST00000488320 PGPEP1Q9NXJ5 209 aa6.5□□□□□ -1.37
COL17A1-207ENST00000488320 GOLT1BQ9Y3E0 138 aa6.5□□□□□ -1.37
COL17A1-207ENST00000488320 PPYP01298 95 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 IFNA5P01569 189 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 PTHLHP12272 177 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 CRYBB3P26998 211 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 G6PCP35575 357 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 FUSP35637 526 aaKnown RBP eCLIP6.49□□□□□ -1.37
COL17A1-207ENST00000488320 HOXA1P49639 335 aaPredicted RBP6.49□□□□□ -1.37
COL17A1-207ENST00000488320 RPS25P62851 125 aaKnown RBP6.49□□□□□ -1.37
COL17A1-207ENST00000488320 RRN3P1Q2M238 152 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 ZNF818PQ6ZRF7 136 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 SSX7Q7RTT5 188 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 DHRSXQ8N5I4 330 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 SYT8Q8NBV8 401 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 C17orf77Q96MU5 243 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 TSC22D3Q99576 134 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 PLCXD1Q9NUJ7 323 aa6.49□□□□□ -1.37
COL17A1-207ENST00000488320 TMEM235A6NFC5 223 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 PTGES3LE9PB15 166 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 CASQ2O14958 399 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-207ENST00000488320 SCGB2A1O75556 95 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 HLA-DRB4P13762 266 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 USF2Q15853 346 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-207ENST00000488320 SERTAD4-AS1Q5TG53 156 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 TMEM17Q86X19 198 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 C8orf59Q8N0T1 100 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-207ENST00000488320 PQLC1Q8N2U9 271 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 BEST4Q8NFU0 473 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 OR4B1Q8NGF8 309 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 OR4A16Q8NH70 328 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 ZNF503Q96F45 646 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 MAGT1Q9H0U3 335 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 HLA-DRB4X5D2U9 266 aa6.48□□□□□ -1.37
COL17A1-207ENST00000488320 DBX1A6NMT0 343 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 FAM90A26D6RGX4 464 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 RLN1P04808 185 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 DEFB130BP0DP73 79 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 DEFB130AP0DP74 79 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 F2RP25116 425 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 PSMA1P25786 263 aaKnown RBP6.47□□□□□ -1.37
COL17A1-207ENST00000488320 SNCAP37840 140 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 ALDH3B2P48448 385 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 OR10A3P58181 314 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 FABP5Q01469 135 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 C16orf54Q6UWD8 224 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 Q6ZSN1 163 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 ZNF114Q8NC26 417 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 LGALS14Q8TCE9 139 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 FCAMRQ8WWV6 532 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 BORCS5Q969J3 196 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 LINC00052Q96N35 136 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 TMEM208Q9BTX3 173 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 S100A14Q9HCY8 104 aa6.47□□□□□ -1.37
COL17A1-207ENST00000488320 IFITM5A6NNB3 132 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 M0QYG6 137 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 SSX5O60225 188 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 FCER2P06734 321 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 HNRNPCP07910 306 aaKnown RBP eCLIP6.46□□□□□ -1.38
COL17A1-207ENST00000488320 NKX2-1P43699 371 aaPredicted RBP6.46□□□□□ -1.38
COL17A1-207ENST00000488320 HERV-K104P61576 105 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 ICAM4Q14773 271 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 GDF5OSQ5U4N7 250 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 LAIR2Q6ISS4 152 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 Q9H3A6 140 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 SEPSECSQ9HD40 501 aaKnown RBP6.46□□□□□ -1.38
COL17A1-207ENST00000488320 ZNF586Q9NXT0 402 aa6.46□□□□□ -1.38
COL17A1-207ENST00000488320 LSM2Q9Y333 95 aaKnown RBP6.46□□□□□ -1.38
COL17A1-207ENST00000488320 LYRM9A8MSI8 78 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 CLN5O75503 358 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 PGLYRP1O75594 196 aaPredicted RBP6.45□□□□□ -1.38
COL17A1-207ENST00000488320 RAB3BP20337 219 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 MYL9P24844 172 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 SUB1P53999 127 aaKnown RBP eCLIP6.45□□□□□ -1.38
COL17A1-207ENST00000488320 DEFB1P60022 68 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 PSG9Q00887 426 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 PRCDQ00LT1 54 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 TIGITQ495A1 244 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 SPINK9Q5DT21 86 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 H2BFWTQ7Z2G1 175 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 CADM3Q8N126 398 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 C1orf158Q8N1D5 194 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 Q8WTZ3 238 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 RNF141Q8WVD5 230 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 GLMPQ8WWB7 406 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 UHRF2Q96PU4 802 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 KRTAP1-5Q9BYS1 174 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 SLC35B3Q9H1N7 401 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 NRN1Q9NPD7 142 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 ACOT13Q9NPJ3 140 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 FKBP14Q9NWM8 211 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 DAPK2Q9UIK4 370 aa6.45□□□□□ -1.38
COL17A1-207ENST00000488320 TRAV30A0A087WSZ9 112 aa6.44□□□□□ -1.38
COL17A1-207ENST00000488320 A0A1W2PPQ1 181 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms