RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 TMEM17Q86X19 198 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 PQLC1Q8N2U9 271 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 OR13F1Q8NGS4 319 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 DCANP1Q8TF63 244 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 NUDCD2Q8WVJ2 157 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 PLEKHA2Q9HB19 425 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 PRNDQ9UKY0 176 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 PLA2G2DQ9UNK4 145 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 APOBP04114 4563 aaKnown RBP5.38□□□□□ -1.55
USP54-213ENST00000481991 LRP1BQ9NZR2 4599 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 MARCH11A6NNE9 402 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 PRM2P04554 102 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 BTF3P20290 206 aaKnown RBP5.37□□□□□ -1.55
USP54-213ENST00000481991 SNCAP37840 140 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 KRTAP10-1P60331 282 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 SPHARQ15513 63 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 OGFRL1Q5TC84 451 aaPredicted RBP5.37□□□□□ -1.55
USP54-213ENST00000481991 HACD4Q5VWC8 232 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 ZBTB34Q8NCN2 500 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 OR4A16Q8NH70 328 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 UFD1Q92890 307 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 MND1Q9BWT6 205 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 ZFAND3Q9H8U3 227 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 ANXA10Q9UJ72 324 aa5.37□□□□□ -1.55
USP54-213ENST00000481991 ZNF705GA8MUZ8 300 aaPredicted RBP5.36□□□□□ -1.55
USP54-213ENST00000481991 FAM90A26D6RGX4 464 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 PDCD5O14737 125 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 RBFOX2O43251 390 aaKnown RBP eCLIP5.36□□□□□ -1.55
USP54-213ENST00000481991 SCGB2A1O75556 95 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 PPYP01298 95 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 HTN1P15515 57 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 CRYBB3P26998 211 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 ERVFC1-1P60608 527 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 RPS25P62851 125 aaKnown RBP5.36□□□□□ -1.55
USP54-213ENST00000481991 ARL6IP1Q15041 203 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 POU2AF1Q16633 256 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 MLANAQ16655 118 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 GDF5OSQ5U4N7 250 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 ZFP1Q6P2D0 407 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 ZNF818PQ6ZRF7 136 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 LGALS14Q8TCE9 139 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 RNF141Q8WVD5 230 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 KRTAP1-5Q9BYS1 174 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 SLC35B3Q9H1N7 401 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 COMMD9Q9P000 198 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 PSORS1C1Q9UIG5 152 aa5.36□□□□□ -1.55
USP54-213ENST00000481991 A0A0J9YY99 117 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 TMEM235A6NFC5 223 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 DBX1A6NMT0 343 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 CASQ2O14958 399 aaPredicted RBP5.35□□□□□ -1.55
USP54-213ENST00000481991 RLN1P04808 185 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 ATP5G1P05496 136 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 HNRNPCP07910 306 aaKnown RBP eCLIP5.35□□□□□ -1.55
USP54-213ENST00000481991 HLA-DRB4P13762 266 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 RAB6AP20340 208 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 ATP5G3P48201 142 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 HOXA1P49639 335 aaPredicted RBP5.35□□□□□ -1.55
USP54-213ENST00000481991 OR10A3P58181 314 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 HERV-K104P61576 105 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 PSG9Q00887 426 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 TIGITQ495A1 244 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 KCTD21Q4G0X4 260 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 RNASE12Q5GAN4 147 aaKnown RBP5.35□□□□□ -1.55
USP54-213ENST00000481991 EBLN2Q6P2I7 272 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 TMEM91Q6ZNR0 172 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 H2BFWTQ7Z2G1 175 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 DHRSXQ8N5I4 330 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 COQ8AQ8NI60 647 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 Q8WTZ3 238 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 GLMPQ8WWB7 406 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 FCAMRQ8WWV6 532 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 FCGR1BQ92637 280 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 HLA-DRB4X5D2U9 266 aa5.35□□□□□ -1.55
USP54-213ENST00000481991 A0A1W2PPQ1 181 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 SMIM30A4D0T7 59 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 PGLYRP1O75594 196 aaPredicted RBP5.34□□□□□ -1.55
USP54-213ENST00000481991 ATP5HO75947 161 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 FGF2P09038 288 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 GCSHP23434 173 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 F2RP25116 425 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 ID1P41134 155 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 OPRK1P41145 380 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 NKX2-1P43699 371 aaPredicted RBP5.34□□□□□ -1.55
USP54-213ENST00000481991 SUB1P53999 127 aaKnown RBP eCLIP5.34□□□□□ -1.55
USP54-213ENST00000481991 LINC00315P59091 139 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 C16orf54Q6UWD8 224 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 SIGLEC15Q6ZMC9 328 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 C10orf67Q8IYJ2 551 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 C1orf158Q8N1D5 194 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 BEST4Q8NFU0 473 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 OR4C16Q8NGL9 310 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 GNPNAT1Q96EK6 184 aaPredicted RBP5.34□□□□□ -1.55
USP54-213ENST00000481991 TSC22D3Q99576 134 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 Q9H3A6 140 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 NRN1Q9NPD7 142 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 TNFRSF18Q9Y5U5 241 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 DNAH5Q8TE73 4624 aa5.34□□□□□ -1.55
USP54-213ENST00000481991 CBY3A6NI87 242 aa5.33□□□□□ -1.56
USP54-213ENST00000481991 IFITM5A6NNB3 132 aa5.33□□□□□ -1.56
USP54-213ENST00000481991 LYRM9A8MSI8 78 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms