RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 OR5C1Q8NGR4 320 aa8.57□□□□□ -1.04
SCN9A-205ENST00000454569 OR2T6Q8NHC8 308 aa8.57□□□□□ -1.04
SCN9A-205ENST00000454569 FAM110DQ8TAY7 271 aaPredicted RBP8.57□□□□□ -1.04
SCN9A-205ENST00000454569 PHYHIPLQ96FC7 376 aa8.57□□□□□ -1.04
SCN9A-205ENST00000454569 SRSF8Q9BRL6 282 aaKnown RBP8.57□□□□□ -1.04
SCN9A-205ENST00000454569 KLK15Q9H2R5 256 aa8.57□□□□□ -1.04
SCN9A-205ENST00000454569 IGLV11-55A0A075B6I3 123 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 AP4M1O00189 453 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 TCF21O43680 179 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 TSPAN9O75954 239 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 IFNA4P05014 189 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 OR8U8P0C7N1 319 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 RAB14P61106 215 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 ZNF266Q14584 549 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 CLINT1Q14677 625 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 NDUFA5Q16718 116 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 SMUG1Q53HV7 270 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 SHISA2Q6UWI4 295 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 TREML4Q6UXN2 200 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 SLC7A5P1Q8MH63 180 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 OR1S2Q8NGQ3 325 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 OR1P1Q8NH06 330 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 PINX1Q96BK5 328 aaKnown RBP8.56□□□□□ -1.04
SCN9A-205ENST00000454569 MISP3Q96FF7 219 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 TENM1Q9UKZ4 2725 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 I3L2K1 104 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 K7EIM0 57 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 OR2J3O76001 311 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 IGHV3-23P01764 117 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 HBG1P69891 147 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 HBG2P69892 147 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 SLC38A11Q08AI6 406 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 UBAC2Q8NBM4 344 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 PRELID1Q9Y255 219 aa8.56□□□□□ -1.04
SCN9A-205ENST00000454569 FBN1P35555 2871 aaKnown RBP8.55□□□□□ -1.04
SCN9A-205ENST00000454569 TRBV9A0A0B4J1U6 114 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 MFSD2BA6NFX1 497 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 DFFBO76075 338 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 SCAF4O95104 1147 aaKnown RBP8.55□□□□□ -1.04
SCN9A-205ENST00000454569 MT-CO2P00403 227 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 IGLV1-40P01703 118 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 DEFA4P12838 97 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 RPP30P78346 268 aaKnown RBP8.55□□□□□ -1.04
SCN9A-205ENST00000454569 CD69Q07108 199 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 KLK9Q2XQG4 91 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 CLLU1Q5K131 121 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 EIF5AL1Q6IS14 154 aaKnown RBP8.55□□□□□ -1.04
SCN9A-205ENST00000454569 HSD17B13Q7Z5P4 300 aaPredicted RBP8.55□□□□□ -1.04
SCN9A-205ENST00000454569 LINC01006Q8NI28 216 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 ATP5SQ99766 215 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 ZNF355PQ9NSJ1 428 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 KLK9Q9UKQ9 250 aa8.55□□□□□ -1.04
SCN9A-205ENST00000454569 IGKV1OR2-108A0A075B7D4 117 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 LORP23490 312 aaPredicted RBP8.54□□□□□ -1.04
SCN9A-205ENST00000454569 RAB11AP62491 216 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 KIAA0141Q14154 515 aaPredicted RBP8.54□□□□□ -1.04
SCN9A-205ENST00000454569 GAMTQ14353 236 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 FAM74A1Q5RGS3 127 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 PRIMA1Q86XR5 153 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 OR10P1Q8NGE3 313 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 PCNPQ8WW12 178 aaKnown RBP8.54□□□□□ -1.04
SCN9A-205ENST00000454569 TMED6Q8WW62 240 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 FBXL7Q9UJT9 491 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 ATRQ13535 2644 aa8.54□□□□□ -1.04
SCN9A-205ENST00000454569 RPS10-NUDT3A0A1W2PQS6 291 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 CRYBA1P05813 215 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 MDKP21741 143 aaPredicted RBP8.53□□□□□ -1.04
SCN9A-205ENST00000454569 OPRK1P41145 380 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 SUB1P53999 127 aaKnown RBP eCLIP8.53□□□□□ -1.04
SCN9A-205ENST00000454569 RHOGP84095 191 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 TCTEX1D4Q5JR98 221 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 HSD17B11Q8NBQ5 300 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 WIPF2Q8TF74 440 aaPredicted RBP8.53□□□□□ -1.04
SCN9A-205ENST00000454569 ZNF414Q96IQ9 312 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 TMEM68Q96MH6 324 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 JMJD8Q96S16 334 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 SLC25A32Q9H2D1 315 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 C16orf95Q9H693 158 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 ZNF580Q9UK33 172 aa8.53□□□□□ -1.04
SCN9A-205ENST00000454569 IGKV1D-37A0A075B6S9 117 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 UBE2L5PA0A1B0GUS4 154 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 PSMB11A5LHX3 300 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 IFNA5P01569 189 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 IGHG4P01861 327 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 TRGV3P03979 118 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 PF4V1P10720 104 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 PSMB8P28062 276 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 KRTAP10-3P60369 221 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 RUNX1Q01196 453 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 VWC2Q2TAL6 325 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 TMEM182Q6ZP80 229 aaPredicted RBP8.52□□□□□ -1.04
SCN9A-205ENST00000454569 C18orf65Q6ZTR6 163 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 SLC16A13Q7RTY0 426 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.52□□□□□ -1.04
SCN9A-205ENST00000454569 LRRC20Q8TCA0 184 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 RNASEH2CQ8TDP1 164 aaKnown RBP8.52□□□□□ -1.04
SCN9A-205ENST00000454569 NPIPB3Q92617 1050 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 GINS3Q9BRX5 216 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 ARV1Q9H2C2 271 aa8.52□□□□□ -1.04
SCN9A-205ENST00000454569 WNK1Q9H4A3 2382 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms