RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 RAB13P51153 203 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 FGF12P61328 243 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 HOXC5Q00444 222 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 CAV1Q03135 178 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 BIKQ13323 160 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 TMEM69Q5SWH9 247 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 ZNF660Q6AZW8 331 aaPredicted RBP2.05□□□□□ -2.08
USP40-204ENST00000427947 C16orf47Q6ZP98 133 aaPredicted RBP2.05□□□□□ -2.08
USP40-204ENST00000427947 OOSP2Q86WS3 158 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 SLC22A24Q8N4F4 322 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 TBC1D19Q8N5T2 526 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 BPIFB6Q8NFQ5 453 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 OR8B12Q8NGG6 310 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 OR10A6Q8NH74 314 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 C1QTNF6Q9BXI9 259 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 PCBD2Q9H0N5 130 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 RSL24D1Q9UHA3 163 aaKnown RBP2.05□□□□□ -2.08
USP40-204ENST00000427947 PIK3C2GO75747 1445 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 KCPQ6ZWJ8 1503 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 ZFYVE16Q7Z3T8 1539 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 RREB1Q92766 1687 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 TNS1Q9HBL0 1735 aaKnown RBP2.05□□□□□ -2.08
USP40-204ENST00000427947 LOXHD1Q8IVV2 1947 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 PLXNB3Q9ULL4 1909 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 TRAV26-2A0A0B4J265 109 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 TMEM269A0A1B0GVZ9 245 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 GNG14A0A1W2PPG7 69 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 A8MUN3 132 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 VGLL3A8MV65 326 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 H3BQ85 93 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 LST1O00453 97 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 HMGB3O15347 200 aaKnown RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 CIAO1O76071 339 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 S1PR2O95136 353 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 IFNA1P01562 189 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 PFN1P07737 140 aaKnown RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 CRYBB3P26998 211 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 SERPINB10P48595 397 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 CRYBA4P53673 196 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 TBPL1P62380 186 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 RPL30P62888 115 aaKnown RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 FLI1Q01543 452 aaPredicted RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 TROQ12816 1431 aaPredicted RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 KIF14Q15058 1648 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 MRPL51Q4U2R6 128 aaKnown RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 PYCR3Q53H96 274 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 TEX36Q5VZQ5 186 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 GLT8D1Q68CQ7 371 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 C3orf33Q6P1S2 294 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 RASL11AQ6T310 242 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 BRD3OSQ6XYD6 125 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 LYZL2Q7Z4W2 148 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 SMIM20Q8N5G0 67 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 ZFAND2AQ8N6M9 145 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 GDPD1Q8N9F7 314 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 C1orf64Q8NEQ6 169 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 OR11H1Q8NG94 326 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 OR52L1Q8NGH7 329 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 OR13C8Q8NGS7 320 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 OR13C6PQ8NH95 151 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 CT55Q8WUE5 264 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 CTTNBP2Q8WZ74 1663 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 ROPN1LQ96C74 230 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 NKX6-2Q9C056 277 aaPredicted RBP2.04□□□□□ -2.08
USP40-204ENST00000427947 CCDC90BQ9GZT6 254 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 MLH3Q9UHC1 1453 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 AK3Q9UIJ7 227 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 THSD7AQ9UPZ6 1657 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 CENPEQ02224 2701 aa2.04□□□□□ -2.08
USP40-204ENST00000427947 KMT2EQ8IZD2 1858 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 DCCP43146 1447 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 TRBV20OR9-2A0A075B6H5 130 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 hCG_1818297A0A087WSY0 165 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 IGKV3D-11A0A0A0MRZ8 115 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 A0A0J9YY10 115 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 EXOC1LA0A1B0GW35 172 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 A0A1B0GX78 115 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 A8MT66 165 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 C2orf74A8MZ97 194 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 I3L521 148 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 PLA2G10O15496 165 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 SERPINE1P05121 402 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 MSNP26038 577 aaKnown RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 ERP29P30040 261 aaKnown RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 ZNF140P52738 457 aaPredicted RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 TSPEAR-AS2P59090 65 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 RPS11P62280 158 aaKnown RBP eCLIP2.03□□□□□ -2.08
USP40-204ENST00000427947 GNG3P63215 75 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 TNFAIP6P98066 277 aaPredicted RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 IAH1Q2TAA2 248 aaPredicted RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 TNFAIP8L3Q5GJ75 292 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 SMARCD3Q6STE5 483 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 Q6ZQT7 251 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 GPHB5Q86YW7 130 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 SGMS2Q8NHU3 365 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 TEX47Q8TBZ9 253 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 CD200R1Q8TD46 325 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 GNPDA2Q8TDQ7 276 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 OR5P3Q8WZ94 311 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms