RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 NTF3P20783 257 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 IGHV1-2P23083 117 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 EDDM3AQ14507 147 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 KIAA1644Q3SXP7 199 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 ACP7Q6ZNF0 438 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 VKORC1L1Q8N0U8 176 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 DEFB125Q8N687 156 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 ZNF439Q8NDP4 499 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 LOC102724200A0A096LPH7 203 aaPredicted RBP13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 IGHV3-13P01766 116 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 IGHV3-7P01780 117 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 SRIP30626 198 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 FOXF2Q12947 444 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 MPV17L2Q567V2 206 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 RNFT1Q5M7Z0 435 aa13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 KLF13Q9Y2Y9 288 aaPredicted RBP13.19□□□□□ -0.3
CHMP1A-201ENST00000397901 KLRC4-KLRK1H3BQV0 150 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 AGFG2O95081 481 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 COL8A2P25067 703 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 BMI1P35226 326 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 RIPPLY3P57055 190 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 CX3CL1P78423 397 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 TGFBR3Q03167 851 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 SMIM21Q3B7S5 101 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 PRAMEF5Q5TYX0 476 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 MIC13Q5XKP0 118 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 HSD17B10Q99714 261 aaKnown RBP13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 V9GYV3 84 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 J3QW42 95 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 RRHO14718 337 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 SELENOVP59797 346 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 RELBQ01201 579 aa13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 HEYLQ9NQ87 328 aaPredicted RBP13.18□□□□□ -0.3
CHMP1A-201ENST00000397901 PCNX2A6NKB5 2137 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 TRGV5A0A0B4J1U4 118 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 C9JCJ5 164 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 LINC00869P0C866 280 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 TBR1Q16650 682 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 PDLIM3Q53GG5 364 aaPredicted RBP13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 TREML4Q6UXN2 200 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 WDR82Q6UXN9 313 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 WASHC3Q9Y3C0 194 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 BMPR1BO00238 502 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 HLA-DQA1P01909 254 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 HOXC12P31275 282 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 GPR12P47775 334 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 BVES-AS1Q5T3Y7 98 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 MDS2Q8NDY4 140 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 OR4A16Q8NH70 328 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 SSMEM1Q8WWF3 244 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 MGST2Q99735 147 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 MS4A5Q9H3V2 200 aa13.17□□□□□ -0.3
CHMP1A-201ENST00000397901 HCFC1P51610 2035 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 Q56UQ5 140 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 ATP1A1-AS1Q5TC04 95 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 VWA1Q6PCB0 445 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 TCF24Q7RTU0 167 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 Q8TCH9 128 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 DSPP15924 2871 aaKnown RBP13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 TRAV3A0A0B4J244 114 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 M0R1X1 148 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 TIMM8AO60220 97 aaPredicted RBP13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 PROP1O75360 226 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 AMY1AP04745 511 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 DUTP33316 252 aaKnown RBP13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 ABHD12Q8N2K0 398 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 OR8B3Q8NGG8 313 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 NEUROG1Q92886 237 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 FER1L6-AS2Q96M78 137 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 OR8B2Q96RD0 313 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 CXXC4Q9H2H0 198 aa13.16□□□□□ -0.3
CHMP1A-201ENST00000397901 SPINT2O43291 252 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 NUDT3O95989 172 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 FABP6P51161 128 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 PSG9Q00887 426 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 PET117Q6UWS5 81 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 C12orf54Q6X4T0 127 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 EAF1Q96JC9 268 aaPredicted RBP13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 GGTLC1Q9BX51 225 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 ST20Q9HBF5 79 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 GNG12Q9UBI6 72 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 YTHDF2Q9Y5A9 579 aaKnown RBP13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 FAM181BA6NEQ2 426 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 CXorf1O96002 111 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 CD46P15529 392 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 OPRK1P41145 380 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 UBE2G1P62253 170 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 RPL39P5Q59GN2 51 aa13.15□□□□□ -0.3
CHMP1A-201ENST00000397901 TRGV10A0A0A0MS01 117 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 C15orf65H3BRN8 121 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 SPINK4O60575 86 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 OR10J4P0C629 311 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 STAG3L2P0CL84 134 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 STAG3L3P0CL85 134 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 RPL31P62899 125 aaKnown RBP13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 SPATA31B1PQ5VZV4 182 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 C16orf54Q6UWD8 224 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 CD177Q8N6Q3 437 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 OR4S2Q8NH73 311 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms