RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CNIH2Q6PI25 160 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 ZNF562Q6V9R5 426 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 Q6ZS49 121 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 HOGA1Q86XE5 327 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 LINC00311Q8N616 119 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 BEST4Q8NFU0 473 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 RPEQ96AT9 228 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 GINS4Q9BRT9 223 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 NXF2Q9GZY0 626 aaKnown RBP4.08□□□□□ -1.76
CLIP1-217ENST00000543205 MIXL1Q9H2W2 232 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 SAV1Q9H4B6 383 aaPredicted RBP4.08□□□□□ -1.76
CLIP1-217ENST00000543205 ABCB10Q9NRK6 738 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 TNFRSF19Q9NS68 423 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 SERTAD4Q9NUC0 356 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 OR1A1Q9P1Q5 309 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 ZNRD1Q9P1U0 126 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 ANXA10Q9UJ72 324 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 KIAA2026Q5HYC2 2103 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 MXRA5Q9NR99 2828 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 IGKV1D-8A0A087WSZ0 117 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 IGKV1-6A0A0C4DH72 117 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 OOSP1A8MZH6 123 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 SULT1C2O00338 296 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 RAB29O14966 203 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 SLC31A2O15432 143 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 P2RY1P47900 373 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 RAB7AP51149 207 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 RAG2P55895 527 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 KLF5Q13887 457 aaPredicted RBP4.07□□□□□ -1.76
CLIP1-217ENST00000543205 SLC9A3R2Q15599 337 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 TNXAQ16473 311 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 LRRC75BQ2VPJ9 315 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 CT45A1Q5HYN5 189 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 TPTE2P1Q5T6R2 138 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 SLC25A48Q6ZT89 311 aaKnown RBP4.07□□□□□ -1.76
CLIP1-217ENST00000543205 LYG1Q8N1E2 194 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 DYNAPQ8N1N2 210 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 GBGT1Q8N5D6 347 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 GVQW1Q8N7I0 195 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 ZNF439Q8NDP4 499 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 CT45A3Q8NHU0 189 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 FCAMRQ8WWV6 532 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 TOMM40LQ969M1 308 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 CABLES2Q9BTV7 478 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 MAP1LC3CQ9BXW4 147 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 BATF3Q9NR55 127 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 RBM7Q9Y580 266 aaKnown RBP4.07□□□□□ -1.76
CLIP1-217ENST00000543205 FBN1P35555 2871 aaKnown RBP4.07□□□□□ -1.76
CLIP1-217ENST00000543205 DSCAML1Q8TD84 2053 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 TRBV6-7A0A0A0MS04 114 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 TEX13DA0A0J9YY54 714 aaPredicted RBP4.07□□□□□ -1.76
CLIP1-217ENST00000543205 DNAJC9-AS1A6NH13 148 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 FAM74A7A6NL05 159 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 LY6LH3BQJ8 138 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 H3BUX3 64 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 M0QXV9 152 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 HSD17B6O14756 317 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 VENTXO95231 258 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 IGHV4-59P01825 116 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 PAX6P26367 422 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 BRS3P32247 399 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 OR3A3P47888 321 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 HERPUD1Q15011 391 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 FAM74A3Q4VXF1 159 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 SOHLH1Q5JUK2 328 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 LDLRAD2Q5SZI1 272 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 FAM131AQ6UXB0 335 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 COX8CQ7Z4L0 72 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 MOB3BQ86TA1 216 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 TMEM86BQ8N661 226 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 PRR26Q8N8Z3 221 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 NECAP2Q9NVZ3 263 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 ZNF221Q9UK13 617 aa4.07□□□□□ -1.76
CLIP1-217ENST00000543205 CLDN34H7C241 214 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 CHST1O43916 411 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 RAMP3O60896 148 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 PMP2P02689 132 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 OR8U9P0C7N5 309 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 NFYAP23511 347 aaPredicted RBP4.06□□□□□ -1.76
CLIP1-217ENST00000543205 HLA-DMAP28067 261 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 RCVRNP35243 200 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 REG1BP48304 166 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 RAB13P51153 203 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 DYNLT3P51808 116 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 TAS2R46P59540 309 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 UBA52P62987 128 aaKnown RBP4.06□□□□□ -1.76
CLIP1-217ENST00000543205 CX3CL1P78423 397 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 MRPS10P82664 201 aaKnown RBP4.06□□□□□ -1.76
CLIP1-217ENST00000543205 ZNF816Q0VGE8 651 aaPredicted RBP4.06□□□□□ -1.76
CLIP1-217ENST00000543205 CDK10Q15131 360 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 VAMP3Q15836 100 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 LY6EQ16553 131 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 C5orf47Q569G3 176 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 AKAP14Q86UN6 197 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 H1FOOQ8IZA3 346 aaPredicted RBP4.06□□□□□ -1.76
CLIP1-217ENST00000543205 LINC01561Q8N1V8 128 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 ZDHHC22Q8N966 263 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 OR5T1Q8NG75 326 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 OR5AP2Q8NGF4 316 aa4.06□□□□□ -1.76
CLIP1-217ENST00000543205 OR1B1Q8NGR6 318 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms