RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TRAV17A0A0B4J275 112 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM213A2RRL7 107 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A8PA6NJQ4 464 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF253O75346 499 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 HLA-DPB1P04440 258 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 OR9G9P0C7N8 305 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A13PP0C7W8 464 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A24PP0C7X0 464 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 HLA-DRB3P79483 266 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 GPX1P07203 203 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 SELPP16109 830 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 ACVRL1P37023 503 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 LCNL1Q6ZST4 164 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 NUP43Q8NFH3 380 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 ISL2Q96A47 359 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 SAP30LQ9HAJ7 183 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 MRPS16Q9Y3D3 137 aaKnown RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 OARD1Q9Y530 152 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 FANCAO15360 1455 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 HOXA3O43365 443 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 OR5AS1Q8N127 324 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 PRELID3AQ96N28 172 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 DERL3Q96Q80 235 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 FIZ1Q96SL8 496 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 NPHP4O75161 1426 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CRYGBP07316 175 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 GLIPR1P48060 266 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 MNX1P50219 401 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 Q6ZSR6 202 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 PLEKHF2Q9H8W4 249 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CNTNAP4Q9C0A0 1308 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 H2BFMP0C1H6 154 aa3.03□□□□□ -1.93
SCN1A-221ENST00000641996 FGF6P10767 208 aa3.03□□□□□ -1.93
SCN1A-221ENST00000641996 FOXC1Q12948 553 aa3.03□□□□□ -1.93
SCN1A-221ENST00000641996 KCNMB4Q86W47 210 aa3.03□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM99Q8N816 258 aa3.03□□□□□ -1.93
SCN1A-221ENST00000641996 NRTNQ99748 197 aa3.03□□□□□ -1.93
SCN1A-221ENST00000641996 CPSF4LA6NMK7 179 aaKnown RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 NDUFB8O95169 186 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 RND3P61587 244 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 DTWD1Q8N5C7 304 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 MPLKIPQ8TAP9 179 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM101Q96IK0 257 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 TTTY10Q9BZA0 68 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ABCC2Q92887 1545 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 TRAV9-1A0A075B6T8 112 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 TRAV8-6A0A0B4J262 113 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 CDAP32320 146 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ISL1P61371 349 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 C2orf15Q8WU43 125 aaKnown RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 RNF122Q9H9V4 155 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 KCNE5Q9UJ90 142 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SHROOM2Q13796 1616 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 A8MWV9 139 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SYNJ2BPP57105 145 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF85Q03923 595 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ARL16Q0P5N6 197 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SLC25A30Q5SVS4 291 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF519Q8TB69 540 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 GRIN2BQ13224 1484 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 LOC285095A0A1B0GVY8 99 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 FGF16O43320 207 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 EFNA2O43921 213 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 TIMP1P01033 207 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 HOXB7P09629 217 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 FOXG1P55316 489 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 POU3F1Q03052 451 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SH2D6Q7Z4S9 175 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SGPP2Q8IWX5 399 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SUSD6Q92537 303 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ITGB4P16144 1822 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 OOSP1A8MZH6 123 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 CRXO43186 299 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 HYPMO75409 117 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 RGNQ15493 299 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 DGAT2L6Q6ZPD8 337 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SFTPA2Q8IWL1 248 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SFTPA1Q8IWL2 248 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 C9orf40Q8IXQ3 194 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 AMN1Q8IY45 258 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 OR4X1Q8NH49 305 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 KCTD12Q96CX2 325 aaKnown RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ARHGEF40Q8TER5 1519 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 WDR83OSQ9Y284 106 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 MAST4O15021 2626 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ZFP36L1Q07352 338 aaKnown RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 STPG3Q8N7X2 389 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 OR51H1Q8NH63 302 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 MCEEQ96PE7 176 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 GPR21Q99679 349 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 PTPN23Q9H3S7 1636 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ARHGEF11O15085 1522 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 GGTLC3B5MD39 225 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 UBE2L6O14933 153 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SPRY3O43610 288 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 P2RX1P51575 399 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SLC25A35Q3KQZ1 300 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 LINC00303Q3SY05 128 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 NEUROG3Q9Y4Z2 214 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 PTPRUQ92729 1446 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms