RNA–Protein interactions for RNA: ENST00000552199.5

RAB3IP-216, Transcript of RAB3A interacting protein, human

TSL 1 (best)

Gene RAB3IP, Length 1,905 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB3IP-216	ENST00000552199	SMCO4	Q9NRQ5	59 aa		11.47	□□□□□ -0.57
RAB3IP-216	ENST00000552199	GNG13	Q9P2W3	67 aa		11.47	□□□□□ -0.57
RAB3IP-216	ENST00000552199	CHD8	Q9HCK8	2581 aa		11.46	□□□□□ -0.57
RAB3IP-216	ENST00000552199	C7orf77	A4D0Y5	90 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199		M0R036	132 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	MB	P02144	154 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	IL6R	P08887	468 aa	Predicted RBP	11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	HSPE1	P61604	102 aa	Known RBP	11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	HFE	Q30201	348 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ZNF672	Q499Z4	452 aa	Predicted RBP	11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	MUC15	Q8N387	334 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	RPP25L	Q8N5L8	163 aa	Known RBP	11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ZNF709	Q8N972	641 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OR13D1	Q8NGV5	346 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	RAB39B	Q96DA2	213 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	NPCDR1	Q9BY65	106 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	RPS10P5	Q9NQ39	176 aa		11.46	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ADGRG4	Q8IZF6	3080 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	MAP1LC3B2	A6NCE7	125 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	RRH	O14718	337 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	SNRNP70	P08621	437 aa	Known RBP	11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	CD1B	P29016	333 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	HOXA1	P49639	335 aa	Predicted RBP	11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	FGF8	P55075	233 aa	Predicted RBP	11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	DLX6	P56179	175 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	FFAR4	Q5NUL3	377 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ABHD12	Q8N2K0	398 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	C8orf31	Q8N9H6	132 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	GGACT	Q9BVM4	153 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	MAP1LC3B	Q9GZQ8	125 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	SLC39A9	Q9NUM3	307 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	WDR83OS	Q9Y284	106 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	NCOR2	Q9Y618	2525 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	PRSS46	E5RG02	174 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	C17orf112	F2Z3M2	114 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	IGKV1-16	P04430	117 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	FBP1	P09467	338 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	C1QTNF9	P0C862	333 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	AKR1C3	P42330	323 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	LINC00311	Q8N616	119 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ZNF596	Q8TC21	504 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	CA5BP1	Q8WTZ4	195 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	TMEM170A	Q8WVE7	144 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	C20orf24	Q9BUV8	137 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	PRND	Q9UKY0	176 aa		11.45	□□□□□ -0.58
RAB3IP-216	ENST00000552199	SMG1	Q96Q15	3661 aa	Known RBP	11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	SPTA1	P02549	2419 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	SRRM4	A7MD48	611 aa	Known RBP	11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	UPK2	O00526	184 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	BCL2	P10415	239 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	RAB11A	P62491	216 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	PMS2P11	Q13670	270 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	RHEB	Q15382	184 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	TMEM155	Q4W5P6	130 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	CYB561D1	Q8N8Q1	229 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OR10G4	Q8NGN3	311 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OR10G9	Q8NGN4	311 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OR10G7	Q8NGN6	311 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	TMEM204	Q9BSN7	226 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	MRPL20	Q9BYC9	149 aa	Known RBP	11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OR51B2	Q9Y5P1	312 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	PUS1	Q9Y606	427 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	KALRN	O60229	2985 aa		11.44	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ZFP92	A6NM28	416 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	COLCA2	A8K830	154 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199		H7C2Y5	167 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199		J3QR06	171 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	COL8A2	P25067	703 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	DLK1	P80370	383 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199		Q8N7P7	452 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	LHX4	Q969G2	390 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ENY2	Q9NPA8	101 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ZNF257	Q9Y2Q1	563 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	CTXND1	A0A1B0GTU2	59 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	LYNX1	G3V0Z9	82 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199		H0YJW9	148 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	APOA2	P02652	100 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	LYNX1	P0DP58	116 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	PLA2G5	P39877	138 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	CEBPG	P53567	150 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	FAM71F2	Q6NXP2	309 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OR5AN1	Q8NGI8	311 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OR10X1	Q8NGY0	326 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	OSR1	Q8TAX0	266 aa	Predicted RBP	11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ACTR3C	Q9C0K3	210 aa	Predicted RBP	11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	TUBA4B	Q9H853	241 aa		11.43	□□□□□ -0.58
RAB3IP-216	ENST00000552199	ZZEF1	O43149	2961 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199		A0A087X0M5	115 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	TRBV23-1	A0A0A0MS06	115 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199		A0A1B0GX30	115 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199		H3BQ15	152 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	MPDU1	O75352	247 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	EIF3G	O75821	320 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	KBTBD11	O94819	623 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	FSTL3	O95633	263 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	IFNA1	P01562	189 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	IFNA4	P05014	189 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	MYOD1	P15172	320 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	PAX6	P26367	422 aa		11.42	□□□□□ -0.58
RAB3IP-216	ENST00000552199	PPOX	P50336	477 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms