RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 CAMLGP49069 296 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 ARHGDIBP52566 201 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 RAB2AP61019 212 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 LCN2P80188 198 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 EWSR1Q01844 656 aaKnown RBP eCLIP9.53□□□□□ -0.88
TRIM40-208ENST00000489892 SMUG1Q53HV7 270 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 Q5PR19 223 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 ATRAIDQ6UW56 229 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 FAM219AQ8IW50 185 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 SELENOHQ8IZQ5 122 aaKnown RBP9.53□□□□□ -0.88
TRIM40-208ENST00000489892 DMBX1Q8NFW5 382 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 OR4S2Q8NH73 311 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 RNASE11Q8TAA1 199 aaKnown RBP9.53□□□□□ -0.88
TRIM40-208ENST00000489892 TP53RKQ96S44 253 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 FOXC2Q99958 501 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 PCGF1Q9BSM1 259 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 TMUB1Q9BVT8 246 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 C11orf1Q9H5F2 150 aa9.53□□□□□ -0.88
TRIM40-208ENST00000489892 LYRM2Q9NU23 88 aaPredicted RBP9.53□□□□□ -0.88
TRIM40-208ENST00000489892 NSD1Q96L73 2696 aaPredicted RBP9.53□□□□□ -0.88
TRIM40-208ENST00000489892 SAA2-SAA4A0A096LPE2 208 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 TRAV20A0A0B4J274 112 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 IGHV4-61A0A0C4DH41 118 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 A0A1B0GU03 582 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 WRBO00258 174 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 MMP23AO75900 390 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 SCAF4O95104 1147 aaKnown RBP9.52□□□□□ -0.89
TRIM40-208ENST00000489892 MSMBP08118 114 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 SFTA3P0C7M3 94 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 SAA2P0DJI9 122 aaPredicted RBP9.52□□□□□ -0.89
TRIM40-208ENST00000489892 EPHA1P21709 976 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 MC5RP33032 325 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 DUTP33316 252 aaKnown RBP9.52□□□□□ -0.89
TRIM40-208ENST00000489892 SNCAP37840 140 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 RAB13P51153 203 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 ZNF134P52741 427 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 ERVK-16P61578 105 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 ARF6P62330 175 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 LOXL1Q08397 574 aaPredicted RBP9.52□□□□□ -0.89
TRIM40-208ENST00000489892 EIF4EBP1Q13541 118 aaPredicted RBP9.52□□□□□ -0.89
TRIM40-208ENST00000489892 HLA-DRB5Q30154 266 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 SP6Q3SY56 376 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 NMSQ5H8A3 153 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 ZNF833PQ6ZTB9 187 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 C11orf42Q8N5U0 333 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 OR11H6Q8NGC7 330 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 LSM10Q969L4 123 aaKnown RBP9.52□□□□□ -0.89
TRIM40-208ENST00000489892 HIPK2Q9H2X6 1198 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 LPAR2Q9HBW0 351 aa9.52□□□□□ -0.89
TRIM40-208ENST00000489892 VPS13CQ709C8 3753 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 FAM74A7A6NL05 159 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 OOSP1A8MZH6 123 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 KCNAB3O43448 404 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 TOX4O94842 621 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 HPRT1P00492 218 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 HBE1P02100 147 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 FOLR2P14207 255 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 ZFP36P26651 326 aaKnown RBP9.51□□□□□ -0.89
TRIM40-208ENST00000489892 HTR1DP28221 377 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 AKR1C2P52895 323 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 RPL23AP62750 156 aaKnown RBP9.51□□□□□ -0.89
TRIM40-208ENST00000489892 PAX2Q02962 417 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 FAM74A3Q4VXF1 159 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 MINOS1Q5TGZ0 78 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 CCDC144NLQ6NUI1 221 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 TGIF2LXQ8IUE1 241 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 C15orf54Q8N8G6 183 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 LEAP2Q969E1 77 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 C1orf159Q96HA4 380 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 RAB40CQ96S21 281 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 SMCO4Q9NRQ5 59 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 MINOS1-NBL1R4GNA1 71 aa9.51□□□□□ -0.89
TRIM40-208ENST00000489892 FAM90A9PA6NNJ1 464 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 FAM90A26D6RGX4 464 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 J3QLI3 93 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 SLC31A2O15432 143 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 HRASP01112 189 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 IGLV1-47P01700 117 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 IGHV3-7P01780 117 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 COX7A1P24310 79 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 LGALS4P56470 323 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 ID3Q02535 119 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 RHEBQ15382 184 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 GUCA2BQ16661 112 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 MIDNQ504T8 468 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 RPL39P5Q59GN2 51 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 STX12Q86Y82 276 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 PNKDQ8N490 385 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 LINC01356Q8N9X3 169 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 RPEQ96AT9 228 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 MDFIQ99750 246 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 PARD6GQ9BYG4 376 aaPredicted RBP9.5□□□□□ -0.89
TRIM40-208ENST00000489892 SIRPDQ9H106 197 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 TUBA4BQ9H853 241 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 DPM3Q9P2X0 92 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 PRELID1Q9Y255 219 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 TBL2Q9Y4P3 447 aaKnown RBP9.5□□□□□ -0.89
TRIM40-208ENST00000489892 MMP24Q9Y5R2 645 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 INSIG2Q9Y5U4 225 aa9.5□□□□□ -0.89
TRIM40-208ENST00000489892 A0A1W2PPE3 182 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms