RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CSN3P07498 182 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 ESDP10768 282 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 C2orf83Q53S99 150 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 RPRMQ9NS64 109 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 NUP37Q8NFH4 326 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 PLXNB2O15031 1838 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 Q96M66 194 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 TINAGQ9UJW2 476 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 TMEM86BQ8N661 226 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 PRSS2P07478 247 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 P2RY4P51582 365 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 CLDN2P57739 230 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 SRSF2Q01130 221 aaKnown RBP6.2□□□□□ -1.42
VPS53-204ENST00000437048 UBE2L6O14933 153 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 ZNHIT1O43257 154 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 PRKNO60260 465 aaPredicted RBP6.2□□□□□ -1.42
VPS53-204ENST00000437048 MFAP4P55083 255 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 SOX8P57073 446 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 CKS1BP61024 79 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 RPL31P62899 125 aaKnown RBP6.2□□□□□ -1.42
VPS53-204ENST00000437048 ZNF703Q9H7S9 590 aaPredicted RBP6.2□□□□□ -1.42
VPS53-204ENST00000437048 TRGV5A0A0B4J1U4 118 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 FAM106CPP0CH98 169 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 DCAF10Q5QP82 559 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 ZNF788Q6ZQV5 615 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BLQ99880 126 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 RHNO1Q9BSD3 238 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 ANOS1P23352 680 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 SLC23A3Q6PIS1 610 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 LRRC29Q8WV35 223 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 RLN3Q8WXF3 142 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 HCFC2Q9Y5Z7 792 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 HS3ST3B1Q9Y662 390 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 ACYP1P07311 99 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 IFITM3Q01628 133 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 ZNF774Q6NX45 483 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 THSD4Q6ZMP0 1018 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 GLI4P10075 376 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 SRSF6Q13247 344 aaKnown RBP6.19□□□□□ -1.42
VPS53-204ENST00000437048 SLC50A1Q9BRV3 221 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 KLK13Q9UKR3 277 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 DLX6P56179 175 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 PSME4Q14997 1843 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 F8W1H4 67 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 ARL14EPLP0DKL9 152 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 MAGEA5P43359 124 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 CENPWQ5EE01 88 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 C5orf66Q9H5L9 145 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 IQCF6A8MYZ5 107 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 SRSF1Q07955 248 aaKnown RBP eCLIP6.19□□□□□ -1.427e-9■■□□□ 13.7
VPS53-204ENST00000437048 SPACA5Q96QH8 159 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 GFRA4Q9GZZ7 299 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 A0A0G2JMM0 328 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 A0A1W2PPB8 328 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 KIR3DP1A8MWS1 328 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 GGTLC3B5MD39 225 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 PLAUP00749 431 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 CXCL10P02778 98 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 LHX2P50458 406 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 EFNB2P52799 333 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 LHFPL4Q7Z7J7 247 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 AMER3Q8N944 861 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 MUC4Q99102 2169 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 F2RL2O00254 374 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 ATXN7O15265 892 aaPredicted RBP6.19□□□□□ -1.42
VPS53-204ENST00000437048 PDE6HQ13956 83 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 CCL28Q9NRJ3 127 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 TM4SF4P48230 202 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 WNT5BQ9H1J7 359 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 RPP21Q9H633 154 aaKnown RBP6.19□□□□□ -1.42
VPS53-204ENST00000437048 SRD5A1P18405 259 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 LDLRAD2Q5SZI1 272 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 LYPD8Q6UX82 237 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 GPR146Q96CH1 333 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 MDP1Q86V88 176 aa6.19□□□□□ -1.42
VPS53-204ENST00000437048 TAF1P21675 1872 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 TRAV8-7A0A075B6U6 113 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 TMEM14DPA8MWL7 114 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 SPRY1O43609 319 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 BGLAPP02818 100 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 SFTA2Q6UW10 78 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 DNASE2BQ8WZ79 361 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 NCKAP5O14513 1909 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 CMC4P56277 68 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 MESP2Q0VG99 397 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 LYPD1Q8N2G4 141 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 FBXW9Q5XUX1 488 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ABHD17AQ96GS6 310 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 HES7Q9BYE0 225 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 NRN1Q9NPD7 142 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 SPANXB1Q9NS25 103 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 CLEC1BQ9P126 229 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 FOXD3Q9UJU5 478 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 TAF1LQ8IZX4 1826 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 REG1AP05451 166 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 SAMD5Q5TGI4 173 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 TRAV8-2A0A0B4J237 113 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 PLEKHB2Q96CS7 222 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ZNF479Q96JC4 524 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 TRAV8-4A0A0B4J246 113 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms