RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RBPMSQ93062 196 aaKnown RBP17.56■□□□□ 0.4
SDC3-202ENST00000339394 HSPB9Q9BQS6 159 aa17.56■□□□□ 0.4
SDC3-202ENST00000339394 BET1LQ9NYM9 111 aa17.56■□□□□ 0.4
SDC3-202ENST00000339394 FBN1P35555 2871 aaKnown RBP17.55■□□□□ 0.4
SDC3-202ENST00000339394 KBTBD11O94819 623 aa17.55■□□□□ 0.4
SDC3-202ENST00000339394 IGKV1-5P01602 117 aa17.55■□□□□ 0.4
SDC3-202ENST00000339394 PRSS8Q16651 343 aa17.55■□□□□ 0.4
SDC3-202ENST00000339394 Q8N2B8 174 aa17.55■□□□□ 0.4
SDC3-202ENST00000339394 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.55■□□□□ 0.4
SDC3-202ENST00000339394 OR52B4Q8NGK2 314 aa17.55■□□□□ 0.4
SDC3-202ENST00000339394 ZNF430Q9H8G1 570 aaPredicted RBP17.55■□□□□ 0.4
SDC3-202ENST00000339394 IGHV7-81A0A0B4J1V7 117 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 ATG12O94817 140 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 CA2P00918 260 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 RAG2P55895 527 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 SRPXP78539 464 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 ZNF562Q6V9R5 426 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 LGI3Q8N145 548 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 TMEM167AQ8TBQ9 72 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 IL22RA2Q969J5 263 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 SEC22CQ9BRL7 303 aa17.54■□□□□ 0.4
SDC3-202ENST00000339394 TRAV3A0A0B4J244 114 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 LINC01548A6NM66 108 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 DUS4LO95620 317 aaKnown RBP17.53■□□□□ 0.4
SDC3-202ENST00000339394 IGHG2P01859 326 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 AKR1C2P52895 323 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 CX3CL1P78423 397 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 KRTAP24-1Q3LI83 254 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 H2BFWTQ7Z2G1 175 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 LYZL2Q7Z4W2 148 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 CADM3Q8N126 398 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 SLC35G3Q8N808 338 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 OR4A5Q8NH83 315 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 UPK2O00526 184 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 NDUFA7O95182 113 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 HKR1P10072 659 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 SSBP2P81877 361 aaPredicted RBP17.53■□□□□ 0.4
SDC3-202ENST00000339394 MMD2Q8IY49 270 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 LRTM2Q8N967 370 aa17.53■□□□□ 0.4
SDC3-202ENST00000339394 RRNAD1Q96FB5 475 aaKnown RBP17.53■□□□□ 0.4
SDC3-202ENST00000339394 A0A0B4J2A0 478 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 CREBL2O60519 120 aaPredicted RBP17.52■□□□□ 0.39
SDC3-202ENST00000339394 IL5P05113 134 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 OR9G9P0C7N8 305 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 P0C879 139 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 GNB1P62873 340 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 NDPQ00604 133 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 IZUMO4Q1ZYL8 232 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 TMEM95Q3KNT9 176 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 SLC35E3Q7Z769 313 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 OR2T6Q8NHC8 308 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 LINC01006Q8NI28 216 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 MITD1Q8WV92 249 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 C16orf95Q9H693 158 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 SHPKQ9UHJ6 478 aa17.52■□□□□ 0.39
SDC3-202ENST00000339394 A0A0G2JRQ6 117 aa17.51■□□□□ 0.39
SDC3-202ENST00000339394 RPL8P62917 257 aaKnown RBP17.51■□□□□ 0.39
SDC3-202ENST00000339394 OXA1LQ15070 435 aa17.51■□□□□ 0.39
SDC3-202ENST00000339394 ARSJQ5FYB0 599 aaPredicted RBP17.51■□□□□ 0.39
SDC3-202ENST00000339394 COQ8AQ8NI60 647 aa17.51■□□□□ 0.39
SDC3-202ENST00000339394 RNASE11Q8TAA1 199 aaKnown RBP17.51■□□□□ 0.39
SDC3-202ENST00000339394 ZNF431Q8TF32 576 aaPredicted RBP17.51■□□□□ 0.39
SDC3-202ENST00000339394 OR51J1Q9H342 316 aa17.51■□□□□ 0.39
SDC3-202ENST00000339394 NSG2Q9Y328 171 aa17.51■□□□□ 0.39
SDC3-202ENST00000339394 MMP24Q9Y5R2 645 aa17.51■□□□□ 0.39
SDC3-202ENST00000339394 PIGBOS1A0A0B4J2F0 54 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 KCNAB3O43448 404 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 ACTL6BO94805 426 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 CNIH1O95406 144 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 DHFRP00374 187 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 VDAC1P21796 283 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 FXYD3Q14802 87 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 TNXAQ16473 311 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 OR4F5Q8NH21 305 aa17.5■□□□□ 0.39
SDC3-202ENST00000339394 LSM10Q969L4 123 aaKnown RBP17.5■□□□□ 0.39
SDC3-202ENST00000339394 PRAF2O60831 178 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 Q6ZRM9 215 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 FAM219AQ8IW50 185 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 PHB2Q99623 299 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 SERTAD4Q9NUC0 356 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 A0A0B4J293 547 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 SNAPC5O75971 98 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 FGF2P09038 288 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 HLA-GP17693 338 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 VDAC2P45880 294 aaPredicted RBP17.49■□□□□ 0.39
SDC3-202ENST00000339394 COMPP49747 757 aaPredicted RBP17.49■□□□□ 0.39
SDC3-202ENST00000339394 RIPPLY3P57055 190 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 GPR146Q96CH1 333 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 FAM103A1Q9BTL3 118 aaKnown RBP17.49■□□□□ 0.39
SDC3-202ENST00000339394 PARP11Q9NR21 331 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 LINC00527Q9UJ94 153 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 FBXO7Q9Y3I1 522 aa17.49■□□□□ 0.39
SDC3-202ENST00000339394 DUXBA0A1W2PPF3 345 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 DBX1A6NMT0 343 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 ATP6V0E1O15342 81 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 IGF1P05019 195 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 MYOD1P15172 320 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 MDKP21741 143 aaPredicted RBP17.48■□□□□ 0.39
SDC3-202ENST00000339394 MAS1LP35410 378 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 OR2B8PP59922 312 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms