RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PARP11Q9NR21 331 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 ANKRD20A5PA0PJZ0 165 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 AP4M1O00189 453 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 SHOXO15266 292 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 NOL3O60936 208 aaKnown RBP7.18□□□□□ -1.26
VPS35-206ENST00000565228 S1PR2O95136 353 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 IGLV1-40P01703 118 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 IGHG4P01861 327 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 APOA2P02652 100 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 RLN1P04808 185 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 APELAP0DMC3 54 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 RPA2P15927 270 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 PSMB8P28062 276 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 UBE2KP61086 200 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 KLF9Q13886 244 aaPredicted RBP7.18□□□□□ -1.26
VPS35-206ENST00000565228 BAK1Q16611 211 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 PHLDA2Q53GA4 152 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 ARSJQ5FYB0 599 aaPredicted RBP7.18□□□□□ -1.26
VPS35-206ENST00000565228 TREML4Q6UXN2 200 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 ZNF66Q6ZN08 573 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 OR51H1Q8NH63 302 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 FCAMRQ8WWV6 532 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 ZNF430Q9H8G1 570 aaPredicted RBP7.18□□□□□ -1.26
VPS35-206ENST00000565228 GNB4Q9HAV0 340 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 ZNF580Q9UK33 172 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 A3GALT2U3KPV4 340 aa7.18□□□□□ -1.26
VPS35-206ENST00000565228 TRAV41A0A0B4J266 112 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 TCRBV4S1A1TA0A5B7 111 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 FABP12A6NFH5 140 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 DBX1A6NMT0 343 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 SPDEFO95238 335 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 PPP5CP53041 499 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 UCP3P55916 312 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 RPL23AP62750 156 aaKnown RBP7.17□□□□□ -1.26
VPS35-206ENST00000565228 FXYD3Q14802 87 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 PRSS8Q16651 343 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 ECSCRQ19T08 205 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 DEFB136Q30KP8 78 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 STEAP1BQ6NZ63 245 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 ZNF562Q6V9R5 426 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 C8orf86Q6ZUL3 223 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 SSX9Q7RTT3 188 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 PPP1R27Q86WC6 154 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 NDUFA11Q86Y39 141 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 SPAG16Q8N0X2 631 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 LFNGQ8NES3 379 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 OR6F1Q8NGZ6 308 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 SGMS2Q8NHU3 365 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 MARCH1Q8TCQ1 289 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 CHPT1Q8WUD6 406 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 ADTRPQ96IZ2 230 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 TSNAXQ99598 290 aaKnown RBP7.17□□□□□ -1.26
VPS35-206ENST00000565228 HSD17B10Q99714 261 aaKnown RBP7.17□□□□□ -1.26
VPS35-206ENST00000565228 RTBDNQ9BSG5 229 aaPredicted RBP7.17□□□□□ -1.26
VPS35-206ENST00000565228 ALX4Q9H161 411 aaPredicted RBP7.17□□□□□ -1.26
VPS35-206ENST00000565228 KIAA1456Q9P272 454 aa7.17□□□□□ -1.26
VPS35-206ENST00000565228 HMX3A6NHT5 357 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 TEX22C9J3V5 150 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 GPR31O00270 319 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 SLC22A5O76082 557 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 RAB3DO95716 219 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 CSF1P09603 554 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 OR9G9P0C7N8 305 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 ETV6P41212 452 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 LGALS7P47929 136 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 TAS2R19P59542 299 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 HERV-K104P61576 105 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 GNB1P62873 340 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 ZNF45Q02386 682 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 RTL8BQ17RB0 113 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 IZUMO4Q1ZYL8 232 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 CNPY1Q3B7I2 92 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 RNASE10Q5GAN6 216 aaKnown RBP7.16□□□□□ -1.26
VPS35-206ENST00000565228 TBC1D26Q86UD7 250 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 FOXRED2Q8IWF2 684 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 TEX45Q8NA69 505 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 ZBTB34Q8NCN2 500 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 GRPEL2Q8TAA5 225 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 OSR1Q8TAX0 266 aaPredicted RBP7.16□□□□□ -1.26
VPS35-206ENST00000565228 TMEM167AQ8TBQ9 72 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 ARPC1AQ92747 370 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 TMEM230Q96A57 120 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 RAX2Q96IS3 184 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 TP53RKQ96S44 253 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 THAP7Q9BT49 309 aaPredicted RBP7.16□□□□□ -1.26
VPS35-206ENST00000565228 C5orf66Q9H5L9 145 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 HRASLSQ9HDD0 168 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 PRR13Q9NZ81 148 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 VSIG4Q9Y279 399 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 DMRT1Q9Y5R6 373 aa7.16□□□□□ -1.26
VPS35-206ENST00000565228 A0A0G2JRQ6 117 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 A0A1W2PN81 502 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 MSGN1A6NI15 193 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 KBTBD11O94819 623 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 PRH1P02810 166 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 OPN1MWP04001 364 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 P0C879 139 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 OPN1MW2P0DN77 364 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 OPN1MW3P0DN78 364 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 RRASP10301 218 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms