RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 GTSCR1Q86UQ5 136 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 HAPLN4Q86UW8 402 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 FAM223AQ8IWN6 122 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 DDB2Q92466 427 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 FCGR1BQ92637 280 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 LYSTQ99698 3801 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 PALMDQ9NP74 551 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 PEMTQ9UBM1 199 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 SSR3Q9UNL2 185 aa9.76□□□□□ -0.85
LINC00643-202ENST00000553426 IGKV1D-8A0A087WSZ0 117 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 SMIM30A4D0T7 59 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 OR2A4O95047 310 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 HLA-DQB1P01920 261 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 IGHV4-30-4P0DP06 118 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 NFYAP23511 347 aaPredicted RBP9.75□□□□□ -0.85
LINC00643-202ENST00000553426 RHOGP84095 191 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 DYRK1AQ13627 763 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 CDK10Q15131 360 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 LCN12Q6JVE5 192 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 SLC25A42Q86VD7 318 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 ADAD2Q8NCV1 583 aaKnown RBP9.75□□□□□ -0.85
LINC00643-202ENST00000553426 VSTM2AQ8TAG5 236 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 HSD17B10Q99714 261 aaKnown RBP9.75□□□□□ -0.85
LINC00643-202ENST00000553426 TXNL4BQ9NX01 149 aaKnown RBP9.75□□□□□ -0.85
LINC00643-202ENST00000553426 DAPK2Q9UIK4 370 aa9.75□□□□□ -0.85
LINC00643-202ENST00000553426 RBMX2Q9Y388 322 aaKnown RBP9.75□□□□□ -0.85
LINC00643-202ENST00000553426 RRP15Q9Y3B9 282 aaKnown RBP9.75□□□□□ -0.85
LINC00643-202ENST00000553426 DPPA5A6NC42 116 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 TMEM235A6NFC5 223 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 A8MZ25 164 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 AIREO43918 545 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 SAA1P0DJI8 122 aaPredicted RBP9.74□□□□□ -0.85
LINC00643-202ENST00000553426 LYL1P12980 280 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 NR2C2APQ86WQ0 139 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 SPARTQ8N0X7 666 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 Q8N402 240 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 OR4S2Q8NH73 311 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 NUDCD2Q8WVJ2 157 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 YTHDF1Q9BYJ9 559 aaKnown RBP9.74□□□□□ -0.85
LINC00643-202ENST00000553426 TUBA4BQ9H853 241 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 ZNF430Q9H8G1 570 aaPredicted RBP9.74□□□□□ -0.85
LINC00643-202ENST00000553426 SIGLEC8Q9NYZ4 499 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 ANXA10Q9UJ72 324 aa9.74□□□□□ -0.85
LINC00643-202ENST00000553426 ELF5Q9UKW6 265 aaPredicted RBP9.74□□□□□ -0.85
LINC00643-202ENST00000553426 ARPC4P59998 168 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 DEFA5Q01523 94 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 EXOSC2Q13868 293 aaKnown RBP9.73□□□□□ -0.85
LINC00643-202ENST00000553426 CASC10Q5T4H9 136 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 SFXN4Q6P4A7 337 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 Q8N1Y9 231 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 TTC9CQ8N5M4 171 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 NECAP1Q8NC96 275 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 TCTEX1D2Q8WW35 142 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 TM2D3Q9BRN9 247 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 AIFM2Q9BRQ8 373 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 OR51E2Q9H255 320 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 AKIP1Q9NQ31 210 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 SPATA2Q9UM82 520 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 ZNF257Q9Y2Q1 563 aa9.73□□□□□ -0.85
LINC00643-202ENST00000553426 DHFRP00374 187 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 HRASP01112 189 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 TRBV12-3P01733 135 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 PRH1P02810 166 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 CSN3P07498 182 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 MAS1LP35410 378 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 KIR2DS2P43631 304 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 SCAND1P57086 179 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 MRGPRG-AS1Q2M3A8 158 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 OR2B11Q5JQS5 317 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 IL34Q6ZMJ4 242 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 ZNF66Q6ZN08 573 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 OR2K2Q8NGT1 345 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 LGALS14Q8TCE9 139 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 ISOC1Q96CN7 298 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 KCTD12Q96CX2 325 aaKnown RBP9.72□□□□□ -0.85
LINC00643-202ENST00000553426 OR2A7Q96R45 310 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 CITED4Q96RK1 184 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 SPATA25Q9BR10 227 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 C19orf73Q9NVV2 129 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 RHBDL2Q9NX52 303 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 ETV7Q9Y603 341 aa9.72□□□□□ -0.85
LINC00643-202ENST00000553426 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.71□□□□□ -0.86
LINC00643-202ENST00000553426 TRBV9A0A0B4J1U6 114 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 IFNA6P05013 189 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 SDC2P34741 201 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 MXD1Q05195 221 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 C15orf32Q32M92 178 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 VKORC1L1Q8N0U8 176 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 MFSD4AQ8N468 514 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 BEST4Q8NFU0 473 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 FYTTD1Q96QD9 318 aaKnown RBP9.71□□□□□ -0.86
LINC00643-202ENST00000553426 DIABLOQ9NR28 239 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 TAS2R8Q9NYW2 309 aa9.71□□□□□ -0.86
LINC00643-202ENST00000553426 TRAV18A0A075B6X5 111 aa9.7□□□□□ -0.86
LINC00643-202ENST00000553426 A0A0A6YYH2 397 aa9.7□□□□□ -0.86
LINC00643-202ENST00000553426 IGKV1D-13A0A0B4J2D9 117 aa9.7□□□□□ -0.86
LINC00643-202ENST00000553426 A6NJ64 397 aa9.7□□□□□ -0.86
LINC00643-202ENST00000553426 BMPR1BO00238 502 aa9.7□□□□□ -0.86
LINC00643-202ENST00000553426 RBMXL2O75526 392 aaKnown RBP9.7□□□□□ -0.86
LINC00643-202ENST00000553426 OR2J3O76001 311 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms