RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C AKL1P38080 1108 aaKnown RBP2.12□□□□□ -2.07
VPS54YDR027C RIM4P38741 713 aa2.12□□□□□ -2.07
VPS54YDR027C NNF1P47149 201 aa2.12□□□□□ -2.07
VPS54YDR027C SNF12P53628 566 aa2.12□□□□□ -2.07
VPS54YDR027C COG8Q04632 607 aa2.12□□□□□ -2.07
VPS54YDR027C VHS3Q08438 674 aa2.12□□□□□ -2.07
VPS54YDR027C GEP3Q08622 556 aa2.12□□□□□ -2.07
VPS54YDR027C TRM732Q03496 1420 aa2.12□□□□□ -2.07
VPS54YDR027C NUP170P38181 1502 aa2.11□□□□□ -2.07
VPS54YDR027C MEF1P25039 761 aa2.11□□□□□ -2.07
VPS54YDR027C YKR075CP36155 307 aa2.11□□□□□ -2.07
VPS54YDR027C THI6P41835 540 aa2.11□□□□□ -2.07
VPS54YDR027C YJR039WP47107 1121 aa2.11□□□□□ -2.07
VPS54YDR027C YGL117WP53133 265 aa2.11□□□□□ -2.07
VPS54YDR027C TRS23Q03784 219 aa2.11□□□□□ -2.07
VPS54YDR027C VBA4Q04602 768 aaKnown RBP2.11□□□□□ -2.07
VPS54YDR027C IZH3Q07959 543 aa2.11□□□□□ -2.07
VPS54YDR027C AIM44Q99299 758 aa2.11□□□□□ -2.07
VPS54YDR027C YTA7P40340 1379 aa2.11□□□□□ -2.07
VPS54YDR027C FRS1P15624 595 aaKnown RBP2.11□□□□□ -2.07
VPS54YDR027C MRPL9P31334 269 aa2.11□□□□□ -2.07
VPS54YDR027C PET127P32606 800 aa2.11□□□□□ -2.07
VPS54YDR027C TIM23P32897 222 aa2.11□□□□□ -2.07
VPS54YDR027C YEL1P34225 687 aa2.11□□□□□ -2.07
VPS54YDR027C MEP2P41948 499 aa2.11□□□□□ -2.07
VPS54YDR027C BIT61P47041 543 aa2.11□□□□□ -2.07
VPS54YDR027C ATP23P53722 227 aa2.11□□□□□ -2.07
VPS54YDR027C YPL068CQ02749 293 aa2.11□□□□□ -2.07
VPS54YDR027C SRP40P32583 406 aaPredicted RBP2.1□□□□□ -2.07
VPS54YDR027C BEM3P32873 1128 aa2.1□□□□□ -2.07
VPS54YDR027C PIH1P38768 344 aa2.1□□□□□ -2.07
VPS54YDR027C PIP2P52960 996 aa2.1□□□□□ -2.07
VPS54YDR027C ATG33Q06485 197 aa2.1□□□□□ -2.07
VPS54YDR027C HMG1P12683 1054 aa2.1□□□□□ -2.07
VPS54YDR027C STE4P18851 423 aa2.1□□□□□ -2.07
VPS54YDR027C RGT1P32862 1170 aa2.1□□□□□ -2.07
VPS54YDR027C AIM14P53109 570 aa2.1□□□□□ -2.07
VPS54YDR027C GIN4Q12263 1142 aa2.1□□□□□ -2.07
VPS54YDR027C DNF3Q12674 1656 aa2.09□□□□□ -2.07
VPS54YDR027C HEM1P09950 548 aaPredicted RBP2.09□□□□□ -2.07
VPS54YDR027C PRP22P24384 1145 aaKnown RBP2.09□□□□□ -2.07
VPS54YDR027C EUG1P32474 517 aa2.09□□□□□ -2.07
VPS54YDR027C ERG13P54839 491 aaKnown RBP2.09□□□□□ -2.07
VPS54YDR027C NUP159P40477 1460 aa2.09□□□□□ -2.08
VPS54YDR027C TUP1P16649 713 aa2.09□□□□□ -2.08
VPS54YDR027C TSR4P25040 408 aa2.09□□□□□ -2.08
VPS54YDR027C IMG2P25642 146 aaPredicted RBP2.09□□□□□ -2.08
VPS54YDR027C PEX6P33760 1030 aa2.09□□□□□ -2.08
VPS54YDR027C BFA1P47113 574 aa2.09□□□□□ -2.08
VPS54YDR027C DCS2Q12123 353 aa2.09□□□□□ -2.08
VPS54YDR027C YLR125WQ12138 136 aa2.09□□□□□ -2.08
VPS54YDR027C YOL098CQ12496 1037 aa2.09□□□□□ -2.08
VPS54YDR027C ZPS1Q12512 249 aa2.09□□□□□ -2.08
VPS54YDR027C PMA2P19657 947 aa2.08□□□□□ -2.08
VPS54YDR027C YPT7P32939 208 aa2.08□□□□□ -2.08
VPS54YDR027C YKL091CP33324 310 aaKnown RBP2.08□□□□□ -2.08
VPS54YDR027C NUG1P40010 520 aaKnown RBP2.08□□□□□ -2.08
VPS54YDR027C UGO1Q03327 502 aa2.08□□□□□ -2.08
VPS54YDR027C MSH2P25847 964 aa2.08□□□□□ -2.08
VPS54YDR027C MAL31P38156 614 aa2.08□□□□□ -2.08
VPS54YDR027C NUP82P40368 713 aa2.08□□□□□ -2.08
VPS54YDR027C IRC8P47046 822 aa2.08□□□□□ -2.08
VPS54YDR027C YMR210WQ03649 449 aa2.08□□□□□ -2.08
VPS54YDR027C LEU2P04173 364 aaPredicted RBP2.07□□□□□ -2.08
VPS54YDR027C RPL7AP05737 244 aaKnown RBP2.07□□□□□ -2.08
VPS54YDR027C PHO8P11491 566 aa2.07□□□□□ -2.08
VPS54YDR027C PCL2P25693 308 aa2.07□□□□□ -2.08
VPS54YDR027C ECM32P32644 1121 aaKnown RBP2.07□□□□□ -2.08
VPS54YDR027C RPC34P32910 317 aa2.07□□□□□ -2.08
VPS54YDR027C PBP2P38151 413 aaKnown RBP RIP-Chip data2.07□□□□□ -2.08not detected
VPS54YDR027C PCM1P38628 557 aaKnown RBP2.07□□□□□ -2.08
VPS54YDR027C BEM4P39011 633 aa2.07□□□□□ -2.08
VPS54YDR027C SNO3P43544 222 aa2.07□□□□□ -2.08
VPS54YDR027C MFM1Q02783 413 aa2.07□□□□□ -2.08
VPS54YDR027C RPN4Q03465 531 aa2.07□□□□□ -2.08
VPS54YDR027C RPL7BQ12213 244 aaKnown RBP2.07□□□□□ -2.08
VPS54YDR027C FRE7Q12333 620 aa2.07□□□□□ -2.08
VPS54YDR027C SFL1P20134 766 aa2.07□□□□□ -2.08
VPS54YDR027C APD1P38281 316 aa2.07□□□□□ -2.08
VPS54YDR027C PPE1P38796 400 aa2.07□□□□□ -2.08
VPS54YDR027C TMN3P40071 706 aa2.07□□□□□ -2.08
VPS54YDR027C NMD5P46970 1048 aa2.07□□□□□ -2.08
VPS54YDR027C YJL043WP47053 257 aa2.07□□□□□ -2.08
VPS54YDR027C CEF1Q03654 590 aaPredicted RBP2.07□□□□□ -2.08
VPS54YDR027C YDL073WQ07454 984 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-LR1P0C2J3 1770 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-FP0CX63 1770 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-GR2P0CX64 1770 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-CP25384 1770 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-DR2Q03494 1770 aa2.07□□□□□ -2.08
VPS54YDR027C TY1B-DR1Q03855 1755 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-DR3Q07791 1770 aaKnown RBP2.07□□□□□ -2.08
VPS54YDR027C TY2B-OR1Q12113 1770 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-DR1Q12472 1770 aa2.07□□□□□ -2.08
VPS54YDR027C TY2B-OR2Q12501 1770 aa2.07□□□□□ -2.08
VPS54YDR027C SPO14P36126 1683 aa2.06□□□□□ -2.08
VPS54YDR027C CPA2P03965 1118 aaKnown RBP2.06□□□□□ -2.08
VPS54YDR027C THI4P32318 326 aa2.06□□□□□ -2.08
VPS54YDR027C SPC97P38863 823 aa2.06□□□□□ -2.08
VPS54YDR027C PXA1P41909 870 aa2.06□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 21.8 ms