RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 CCDC12Q8WUD4 166 aaPredicted RBP10.59□□□□□ -0.71
HDAC9-229ENST00000622668 SETBP1Q9Y6X0 1596 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 GPAA1O43292 621 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 LIG1P18858 919 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 CHST3Q7LGC8 479 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 METAP2P50579 478 aaKnown RBP eCLIP10.58□□□□□ -0.72
HDAC9-229ENST00000622668 CACNB3P54284 484 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 PABPC4Q13310 644 aaKnown RBP eCLIP10.58□□□□□ -0.72
HDAC9-229ENST00000622668 DIXDC1Q155Q3 683 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 PPP4R3AQ6IN85 833 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 APPBP2Q92624 585 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 BMP2KQ9NSY1 1161 aaPredicted RBP10.58□□□□□ -0.72
HDAC9-229ENST00000622668 CNTNAP4Q9C0A0 1308 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 ADORA1P30542 326 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 GRIPAP1Q4V328 841 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 HEATR3Q7Z4Q2 680 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 GPHNQ9NQX3 736 aaPredicted RBP10.58□□□□□ -0.72
HDAC9-229ENST00000622668 RBM19Q9Y4C8 960 aaKnown RBP10.58□□□□□ -0.72
HDAC9-229ENST00000622668 TRPM1Q7Z4N2 1603 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 KLF18A0A0U1RQI7 1052 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 USP17L12C9JPN9 530 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 USP17L21D6R901 530 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 CAMTA2O94983 1202 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 TTC22Q5TAA0 569 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 CCDC129Q6ZRS4 1044 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 CCDC83Q8IWF9 413 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 BRF1Q92994 677 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 ZNRF3Q9ULT6 936 aa10.58□□□□□ -0.72
HDAC9-229ENST00000622668 ZBTB12Q9Y330 459 aaPredicted RBP10.58□□□□□ -0.72
HDAC9-229ENST00000622668 LMNB1P20700 586 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 GNAQP50148 359 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 CFAP100Q494V2 611 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 DNTTIP2Q5QJE6 756 aaKnown RBP10.57□□□□□ -0.72
HDAC9-229ENST00000622668 SLC26A6Q9BXS9 759 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 HACL1Q9UJ83 578 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 DDX49Q9Y6V7 483 aaKnown RBP10.57□□□□□ -0.72
HDAC9-229ENST00000622668 ZBTB43O43298 467 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 CA8P35219 290 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 SSRP1Q08945 709 aaKnown RBP10.57□□□□□ -0.72
HDAC9-229ENST00000622668 NKX1-1Q15270 411 aaPredicted RBP10.57□□□□□ -0.72
HDAC9-229ENST00000622668 JMYQ8N9B5 988 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 UPF1Q92900 1129 aaKnown RBP eCLIP10.57□□□□□ -0.72
HDAC9-229ENST00000622668 CNOT7Q9UIV1 285 aaKnown RBP10.57□□□□□ -0.72
HDAC9-229ENST00000622668 MINPP1Q9UNW1 487 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 RBM8AQ9Y5S9 174 aaKnown RBP10.57□□□□□ -0.72
HDAC9-229ENST00000622668 QRICH2Q9H0J4 1663 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 FERMT3Q86UX7 667 aa10.57□□□□□ -0.72
HDAC9-229ENST00000622668 FIBPO43427 364 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 HDAC1Q13547 482 aaPredicted RBP10.56□□□□□ -0.72
HDAC9-229ENST00000622668 BRDTQ58F21 947 aaPredicted RBP10.56□□□□□ -0.72
HDAC9-229ENST00000622668 FCHSD1Q86WN1 690 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 TMTC2Q8N394 836 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 EAF2Q96CJ1 260 aaPredicted RBP10.56□□□□□ -0.72
HDAC9-229ENST00000622668 TDRD3Q9H7E2 651 aaKnown RBP10.56□□□□□ -0.72
HDAC9-229ENST00000622668 SP8Q8IXZ3 490 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 MICALL2Q8IY33 904 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 SDR42E1Q8WUS8 393 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 SPDYE3A6NKU9 549 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 ZBED4O75132 1171 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 ME1P48163 572 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 CERKLQ49MI3 558 aaPredicted RBP10.56□□□□□ -0.72
HDAC9-229ENST00000622668 ANKRD20A12PQ8NF67 263 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 C8orf76Q96K31 380 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 ZSCAN31Q96LW9 406 aaPredicted RBP10.56□□□□□ -0.72
HDAC9-229ENST00000622668 CD209Q9NNX6 404 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 CLIP2Q9UDT6 1046 aa10.56□□□□□ -0.72
HDAC9-229ENST00000622668 COL5A2P05997 1499 aaPredicted RBP10.56□□□□□ -0.72
HDAC9-229ENST00000622668 EPS15P42566 896 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 NAPAP54920 295 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 KBTBD3Q8NAB2 608 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 FBXO3Q9UK99 471 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 PTPDC1A2A3K4 754 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 TRIM75PA6NK02 468 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 IGKV5-2P06315 115 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 ZNF396Q96N95 335 aaPredicted RBP10.55□□□□□ -0.72
HDAC9-229ENST00000622668 PRM3Q9NNZ6 103 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 COPRSQ9NQ92 184 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 TGFB2P61812 414 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 GPSM2P81274 684 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 NUCB1Q02818 461 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 RTN1Q16799 776 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 KIFC2Q96AC6 838 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 H7C1W4 665 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 VEGFAP15692 232 aaPredicted RBP10.55□□□□□ -0.72
HDAC9-229ENST00000622668 NUCB2P80303 420 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 KIF4BQ2VIQ3 1234 aa10.55□□□□□ -0.72
HDAC9-229ENST00000622668 OTUD7AQ8TE49 926 aaPredicted RBP10.55□□□□□ -0.72
HDAC9-229ENST00000622668 GOLGA6L19H0YKK7 550 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 PRC1O43663 620 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 ZNF853P0CG23 659 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 TFAP4Q01664 338 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 TSR1Q2NL82 804 aaKnown RBP10.54□□□□□ -0.72
HDAC9-229ENST00000622668 CRAMP1Q96RY5 1269 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 ORC3Q9UBD5 711 aaPredicted RBP10.54□□□□□ -0.72
HDAC9-229ENST00000622668 CCDC171Q6TFL3 1326 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 B4E1Z4 1266 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 PDE6AP16499 860 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 PI16Q6UXB8 463 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 HMG20BQ9P0W2 317 aa10.54□□□□□ -0.72
HDAC9-229ENST00000622668 NEURL4Q96JN8 1562 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms