RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 DCAF8L2P0C7V8 631 aa17.48■□□□□ 0.39
HDAC9-229ENST00000622668 NISCHQ9Y2I1 1504 aa17.37■□□□□ 0.37
HDAC9-229ENST00000622668 SHROOM4Q9ULL8 1493 aa15.94■□□□□ 0.14
HDAC9-229ENST00000622668 SUPT5HO00267 1087 aaKnown RBP15.77■□□□□ 0.12
HDAC9-229ENST00000622668 ABCC9O60706 1549 aa15.64■□□□□ 0.09
HDAC9-229ENST00000622668 PABPN1Q86U42 306 aaKnown RBP eCLIP15.31■□□□□ 0.04
HDAC9-229ENST00000622668 EHMT2Q96KQ7 1210 aa15.16■□□□□ 0.02
HDAC9-229ENST00000622668 FAM9AQ8IZU1 332 aaPredicted RBP14.86□□□□□ -0.03
HDAC9-229ENST00000622668 RANGAP1P46060 587 aaPredicted RBP14.78□□□□□ -0.04
HDAC9-229ENST00000622668 TRIM41Q8WV44 630 aa14.63□□□□□ -0.07
HDAC9-229ENST00000622668 ATP1B4Q9UN42 357 aaPredicted RBP14.62□□□□□ -0.07
HDAC9-229ENST00000622668 TTBK1Q5TCY1 1321 aaPredicted RBP14.59□□□□□ -0.07
HDAC9-229ENST00000622668 APLP2Q06481 763 aa14.59□□□□□ -0.07
HDAC9-229ENST00000622668 CCDC180Q9P1Z9 1646 aa14.51□□□□□ -0.09
HDAC9-229ENST00000622668 SCRIBQ14160 1630 aa14.49□□□□□ -0.09
HDAC9-229ENST00000622668 UBTFP17480 764 aaKnown RBP14.47□□□□□ -0.09
HDAC9-229ENST00000622668 FBLN2P98095 1184 aa14.44□□□□□ -0.1
HDAC9-229ENST00000622668 RB1CC1Q8TDY2 1594 aa14.42□□□□□ -0.1
HDAC9-229ENST00000622668 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.37□□□□□ -0.11
HDAC9-229ENST00000622668 HNRNPUL2Q1KMD3 747 aaKnown RBP14.37□□□□□ -0.11
HDAC9-229ENST00000622668 ZCCHC6Q5VYS8 1495 aaKnown RBP14.29□□□□□ -0.12
HDAC9-229ENST00000622668 MYT1LQ9UL68 1186 aa14.27□□□□□ -0.13
HDAC9-229ENST00000622668 NACADO15069 1562 aa14.22□□□□□ -0.13
HDAC9-229ENST00000622668 ERCC6Q03468 1493 aa13.97□□□□□ -0.17
HDAC9-229ENST00000622668 CHIC1Q5VXU3 224 aa13.94□□□□□ -0.18
HDAC9-229ENST00000622668 PPARGC1BQ86YN6 1023 aaKnown RBP13.92□□□□□ -0.18
HDAC9-229ENST00000622668 ARID3CA6NKF2 412 aa13.91□□□□□ -0.18
HDAC9-229ENST00000622668 CHMP7Q8WUX9 453 aaPredicted RBP13.88□□□□□ -0.19
HDAC9-229ENST00000622668 NPM1P06748 294 aaKnown RBP eCLIP13.87□□□□□ -0.19
HDAC9-229ENST00000622668 BAZ1BQ9UIG0 1483 aaKnown RBP13.86□□□□□ -0.19
HDAC9-229ENST00000622668 ITGAEP38570 1179 aa13.86□□□□□ -0.19
HDAC9-229ENST00000622668 P3H3Q8IVL6 736 aa13.86□□□□□ -0.19
HDAC9-229ENST00000622668 LOC105371045A0A1W2PR82 267 aa13.81□□□□□ -0.2
HDAC9-229ENST00000622668 CECR2Q9BXF3 1484 aa13.8□□□□□ -0.2
HDAC9-229ENST00000622668 PCGF6Q9BYE7 350 aa13.74□□□□□ -0.21
HDAC9-229ENST00000622668 DCAF1Q9Y4B6 1507 aa13.72□□□□□ -0.21
HDAC9-229ENST00000622668 PLPPR3Q6T4P5 718 aa13.68□□□□□ -0.22
HDAC9-229ENST00000622668 CSRNP3Q8WYN3 585 aa13.68□□□□□ -0.22
HDAC9-229ENST00000622668 RSF1Q96T23 1441 aaPredicted RBP13.68□□□□□ -0.22
HDAC9-229ENST00000622668 TRHP20396 242 aaPredicted RBP13.67□□□□□ -0.22
HDAC9-229ENST00000622668 BAZ1AQ9NRL2 1556 aaPredicted RBP13.65□□□□□ -0.22
HDAC9-229ENST00000622668 ZNF777Q9ULD5 760 aaPredicted RBP13.6□□□□□ -0.23
HDAC9-229ENST00000622668 FAM50AQ14320 339 aaKnown RBP13.6□□□□□ -0.23
HDAC9-229ENST00000622668 DNAJC5BQ9UF47 199 aa13.6□□□□□ -0.23
HDAC9-229ENST00000622668 PDS5BQ9NTI5 1447 aa13.58□□□□□ -0.24
HDAC9-229ENST00000622668 ESF1Q9H501 851 aaKnown RBP13.58□□□□□ -0.24
HDAC9-229ENST00000622668 CDK11AQ9UQ88 783 aaPredicted RBP13.57□□□□□ -0.24
HDAC9-229ENST00000622668 MYO15BQ96JP2 1530 aa13.55□□□□□ -0.24
HDAC9-229ENST00000622668 CCER1Q8TC90 406 aaPredicted RBP13.53□□□□□ -0.24
HDAC9-229ENST00000622668 KCNH8Q96L42 1107 aa13.52□□□□□ -0.25
HDAC9-229ENST00000622668 SMARCA2P51531 1590 aa13.5□□□□□ -0.25
HDAC9-229ENST00000622668 MROH2BQ7Z745 1585 aa13.47□□□□□ -0.25
HDAC9-229ENST00000622668 BCANQ96GW7 911 aa13.46□□□□□ -0.25
HDAC9-229ENST00000622668 TRIM52Q96A61 297 aa13.45□□□□□ -0.26
HDAC9-229ENST00000622668 CADPSQ9ULU8 1353 aa13.44□□□□□ -0.26
HDAC9-229ENST00000622668 WRNQ14191 1432 aaPredicted RBP eCLIP13.43□□□□□ -0.26
HDAC9-229ENST00000622668 ATAD2BQ9ULI0 1458 aa13.43□□□□□ -0.26
HDAC9-229ENST00000622668 TDRD9Q8NDG6 1382 aaKnown RBP13.4□□□□□ -0.26
HDAC9-229ENST00000622668 POLR3GLQ9BT43 218 aa13.39□□□□□ -0.27
HDAC9-229ENST00000622668 ARID4BQ4LE39 1312 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-229ENST00000622668 CYB5RLQ6IPT4 315 aa13.35□□□□□ -0.27
HDAC9-229ENST00000622668 SLC4A1APQ9BWU0 796 aaKnown RBP13.34□□□□□ -0.27
HDAC9-229ENST00000622668 EIF4G1Q04637 1599 aaKnown RBP13.34□□□□□ -0.27
HDAC9-229ENST00000622668 OSCARQ8IYS5 282 aa13.34□□□□□ -0.27
HDAC9-229ENST00000622668 PLEKHD1A6NEE1 506 aa13.33□□□□□ -0.28
HDAC9-229ENST00000622668 KIF27Q86VH2 1401 aa13.33□□□□□ -0.28
HDAC9-229ENST00000622668 STAG3Q9UJ98 1225 aa13.32□□□□□ -0.28
HDAC9-229ENST00000622668 SOGA1O94964 1423 aa13.31□□□□□ -0.28
HDAC9-229ENST00000622668 CCDC88BA6NC98 1476 aa13.3□□□□□ -0.28
HDAC9-229ENST00000622668 CUX2O14529 1486 aa13.29□□□□□ -0.28
HDAC9-229ENST00000622668 CEP164Q9UPV0 1460 aa13.29□□□□□ -0.28
HDAC9-229ENST00000622668 CHGAP10645 457 aaKnown RBP13.28□□□□□ -0.28
HDAC9-229ENST00000622668 CNGB1Q14028 1251 aaPredicted RBP13.25□□□□□ -0.29
HDAC9-229ENST00000622668 ZNF326Q5BKZ1 582 aaKnown RBP13.24□□□□□ -0.29
HDAC9-229ENST00000622668 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.24□□□□□ -0.29
HDAC9-229ENST00000622668 TSPY4P0CV99 314 aa13.23□□□□□ -0.29
HDAC9-229ENST00000622668 TSPY10P0CW01 314 aa13.23□□□□□ -0.29
HDAC9-229ENST00000622668 CC2D2AQ9P2K1 1620 aa13.23□□□□□ -0.29
HDAC9-229ENST00000622668 FANCD2Q9BXW9 1451 aa13.23□□□□□ -0.29
HDAC9-229ENST00000622668 SMARCA4P51532 1647 aa13.22□□□□□ -0.29
HDAC9-229ENST00000622668 WIZO95785 1651 aa13.21□□□□□ -0.29
HDAC9-229ENST00000622668 MTUS2Q5JR59 1369 aa13.21□□□□□ -0.3
HDAC9-229ENST00000622668 NCAPD3P42695 1498 aa13.2□□□□□ -0.3
HDAC9-229ENST00000622668 CARMIL1Q5VZK9 1371 aa13.2□□□□□ -0.3
HDAC9-229ENST00000622668 CHIC2Q9UKJ5 165 aa13.19□□□□□ -0.3
HDAC9-229ENST00000622668 TRIM26Q12899 539 aaPredicted RBP13.19□□□□□ -0.3
HDAC9-229ENST00000622668 MLECQ14165 292 aa13.15□□□□□ -0.3
HDAC9-229ENST00000622668 NEUROD1Q13562 356 aa13.15□□□□□ -0.3
HDAC9-229ENST00000622668 SENP3Q9H4L4 574 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-229ENST00000622668 NESP48681 1621 aa13.14□□□□□ -0.31
HDAC9-229ENST00000622668 JPH4Q96JJ6 628 aa13.13□□□□□ -0.31
HDAC9-229ENST00000622668 TOP2AP11388 1531 aaKnown RBP13.13□□□□□ -0.31
HDAC9-229ENST00000622668 CARMIL2Q6F5E8 1435 aa13.1□□□□□ -0.31
HDAC9-229ENST00000622668 CFDP1Q9UEE9 299 aaPredicted RBP13.1□□□□□ -0.31
HDAC9-229ENST00000622668 CLIP1P30622 1438 aa13.08□□□□□ -0.32
HDAC9-229ENST00000622668 AEBP2Q6ZN18 517 aaPredicted RBP13.06□□□□□ -0.32
HDAC9-229ENST00000622668 EEA1Q15075 1411 aa13.05□□□□□ -0.32
HDAC9-229ENST00000622668 ABCC8Q09428 1581 aa13.05□□□□□ -0.32
HDAC9-229ENST00000622668 BICRAQ9NZM4 1560 aa13.03□□□□□ -0.32
HDAC9-229ENST00000622668 ZEB1P37275 1124 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms