RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MCM5P33992 734 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 LRSAM1Q6UWE0 723 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 CYB5R4Q7L1T6 521 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 ADGRA1Q86SQ6 560 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 LCORLQ8N3X6 602 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 FBXL16Q8N461 479 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 ZNF274Q96GC6 653 aaPredicted RBP17.06■□□□□ 0.32
VRK3-217ENST00000599538 TFIP11Q9UBB9 837 aaKnown RBP17.06■□□□□ 0.32
VRK3-217ENST00000599538 RGL2O15211 777 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 EVCP57679 992 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 UBE2HP62256 183 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 MIGA1Q8NAN2 632 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 NLRP3Q96P20 1036 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 NYXQ9GZU5 481 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 C4AP0C0L4 1744 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 C4BP0C0L5 1744 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 SALL1Q9NSC2 1324 aa17.06■□□□□ 0.32
VRK3-217ENST00000599538 TM4SF1P30408 202 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 NASPP49321 788 aaPredicted RBP17.05■□□□□ 0.32
VRK3-217ENST00000599538 RPS8P62241 208 aaKnown RBP17.05■□□□□ 0.32
VRK3-217ENST00000599538 UBE4AQ14139 1066 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 RALYLQ86SE5 291 aaKnown RBP17.05■□□□□ 0.32
VRK3-217ENST00000599538 IFNL3Q8IZI9 196 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 FAM184AQ8NB25 1140 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 LLPHQ9BRT6 129 aaKnown RBP17.05■□□□□ 0.32
VRK3-217ENST00000599538 LRP2BPQ9P2M1 347 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 ABCF2Q9UG63 623 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 TRPC5Q9UL62 973 aaPredicted RBP17.05■□□□□ 0.32
VRK3-217ENST00000599538 HPS5Q9UPZ3 1129 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 GSG1L2A8MUP6 293 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 PATL2C9JE40 543 aaKnown RBP17.05■□□□□ 0.32
VRK3-217ENST00000599538 RESTQ13127 1097 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 TPTE2Q6XPS3 522 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 FAM84BQ96KN1 310 aaPredicted RBP17.05■□□□□ 0.32
VRK3-217ENST00000599538 SENP2Q9HC62 589 aa17.05■□□□□ 0.32
VRK3-217ENST00000599538 NEDD4P46934 1319 aa17.04■□□□□ 0.32
VRK3-217ENST00000599538 KLF18A0A0U1RQI7 1052 aa17.04■□□□□ 0.32
VRK3-217ENST00000599538 B4E1Z4 1266 aa17.04■□□□□ 0.32
VRK3-217ENST00000599538 FDPSP14324 419 aaKnown RBP17.04■□□□□ 0.32
VRK3-217ENST00000599538 RFC4P35249 363 aa17.04■□□□□ 0.32
VRK3-217ENST00000599538 CTDSPL2Q05D32 466 aa17.04■□□□□ 0.32
VRK3-217ENST00000599538 KRT85P78386 507 aa17.03■□□□□ 0.32
VRK3-217ENST00000599538 TRAPPC3LQ5T215 181 aa17.03■□□□□ 0.32
VRK3-217ENST00000599538 QTRT2Q9H974 415 aaKnown RBP17.03■□□□□ 0.32
VRK3-217ENST00000599538 TNRC6CQ9HCJ0 1690 aaKnown RBP17.03■□□□□ 0.32
VRK3-217ENST00000599538 H3BQV1 296 aa17.03■□□□□ 0.32
VRK3-217ENST00000599538 PDIA4P13667 645 aaKnown RBP17.03■□□□□ 0.32
VRK3-217ENST00000599538 GUCY1B3Q02153 619 aa17.03■□□□□ 0.32
VRK3-217ENST00000599538 NFIXQ14938 502 aa17.03■□□□□ 0.32
VRK3-217ENST00000599538 IFFO2Q5TF58 517 aa17.03■□□□□ 0.32
VRK3-217ENST00000599538 ALX1Q15699 326 aa17.02■□□□□ 0.32
VRK3-217ENST00000599538 ZNF384Q8TF68 577 aa17.02■□□□□ 0.32
VRK3-217ENST00000599538 BCL11BQ9C0K0 894 aaPredicted RBP17.02■□□□□ 0.32
VRK3-217ENST00000599538 NAPBQ9H115 298 aa17.02■□□□□ 0.32
VRK3-217ENST00000599538 TFCP2L1Q9NZI6 479 aa17.02■□□□□ 0.32
VRK3-217ENST00000599538 GOLGA8BA8MQT2 603 aa17.02■□□□□ 0.31
VRK3-217ENST00000599538 SMIM22K7EJ46 135 aa17.02■□□□□ 0.31
VRK3-217ENST00000599538 CYP7A1P22680 504 aa17.02■□□□□ 0.31
VRK3-217ENST00000599538 TXNRD3Q86VQ6 643 aa17.02■□□□□ 0.31
VRK3-217ENST00000599538 STK11IPQ8N1F8 1099 aa17.02■□□□□ 0.31
VRK3-217ENST00000599538 SLC4A4Q9Y6R1 1079 aa17.02■□□□□ 0.31
VRK3-217ENST00000599538 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.01■□□□□ 0.31
VRK3-217ENST00000599538 HMGN5P82970 282 aaKnown RBP17.01■□□□□ 0.31
VRK3-217ENST00000599538 TRDNQ13061 729 aa17.01■□□□□ 0.31
VRK3-217ENST00000599538 CAVIN4Q5BKX8 364 aa17.01■□□□□ 0.31
VRK3-217ENST00000599538 RNF214Q8ND24 703 aa17.01■□□□□ 0.31
VRK3-217ENST00000599538 RAI14Q9P0K7 980 aa17.01■□□□□ 0.31
VRK3-217ENST00000599538 RXRAP19793 462 aa17■□□□□ 0.31
VRK3-217ENST00000599538 VPS37DQ86XT2 251 aa17■□□□□ 0.31
VRK3-217ENST00000599538 SDR42E1Q8WUS8 393 aa17■□□□□ 0.31
VRK3-217ENST00000599538 SYAP1Q96A49 352 aaPredicted RBP17■□□□□ 0.31
VRK3-217ENST00000599538 CARMIL3Q8ND23 1372 aa17■□□□□ 0.31
VRK3-217ENST00000599538 NPHP1O15259 732 aa17■□□□□ 0.31
VRK3-217ENST00000599538 CCDC183Q5T5S1 534 aa17■□□□□ 0.31
VRK3-217ENST00000599538 OTUD7BQ6GQQ9 843 aa17■□□□□ 0.31
VRK3-217ENST00000599538 FBXO33Q7Z6M2 555 aa17■□□□□ 0.31
VRK3-217ENST00000599538 LEO1Q8WVC0 666 aaPredicted RBP17■□□□□ 0.31
VRK3-217ENST00000599538 FTOQ9C0B1 505 aaKnown RBP eCLIP17■□□□□ 0.31
VRK3-217ENST00000599538 GJB4Q9NTQ9 266 aa17■□□□□ 0.31
VRK3-217ENST00000599538 PNPLA7Q6ZV29 1317 aa17■□□□□ 0.31
VRK3-217ENST00000599538 CACNA1SQ13698 1873 aa17■□□□□ 0.31
VRK3-217ENST00000599538 SH2B2O14492 632 aaPredicted RBP16.99■□□□□ 0.31
VRK3-217ENST00000599538 ADD1P35611 737 aaKnown RBP16.99■□□□□ 0.31
VRK3-217ENST00000599538 IGDCC4Q8TDY8 1250 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 GNL3LQ9NVN8 582 aaKnown RBP16.99■□□□□ 0.31
VRK3-217ENST00000599538 ZSWIM5Q9P217 1185 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 ANGEL1Q9UNK9 670 aaKnown RBP16.99■□□□□ 0.31
VRK3-217ENST00000599538 WDR19Q8NEZ3 1342 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 LIG1P18858 919 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 CSPP1Q1MSJ5 1256 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 NAA16Q6N069 864 aaPredicted RBP16.99■□□□□ 0.31
VRK3-217ENST00000599538 SPATA32Q96LK8 384 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 JAG2Q9Y219 1238 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 ZMYM6O95789 1325 aa16.99■□□□□ 0.31
VRK3-217ENST00000599538 CHD4Q14839 1912 aa16.98■□□□□ 0.31
VRK3-217ENST00000599538 ELP1O95163 1332 aa16.98■□□□□ 0.31
VRK3-217ENST00000599538 KDM4AO75164 1064 aa16.98■□□□□ 0.31
VRK3-217ENST00000599538 TRIM37O94972 964 aa16.98■□□□□ 0.31
VRK3-217ENST00000599538 TDO2P48775 406 aa16.98■□□□□ 0.31
VRK3-217ENST00000599538 DYNLL1P63167 89 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms