RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	KLF18	A0A0U1RQI7	1052 aa		18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	PFKFB1	P16118	471 aa		18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	RALYL	Q86SE5	291 aa	Known RBP	18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	CEP126	Q9P2H0	1117 aa		18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	DDX60	Q8IY21	1712 aa	Known RBP	18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	GLI3	P10071	1580 aa		18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	APPBP2	Q92624	585 aa		18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	OSBP2	Q969R2	916 aa		18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	HPS5	Q9UPZ3	1129 aa		18.82	■□□□□ 0.6
SHMT2-231	ENST00000557433	CPD	O75976	1380 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	GOLGA6L9	A6NEM1	432 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	ATP8B1	O43520	1251 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	CABP4	P57796	275 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	MYL5	Q02045	173 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	SYT10	Q6XYQ8	523 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	TMX1	Q9H3N1	280 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	HPSE	Q9Y251	543 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433	NUP188	Q5SRE5	1749 aa		18.81	■□□□□ 0.6
SHMT2-231	ENST00000557433		A0A087WWV3	80 aa		18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	ZSCAN12	O43309	604 aa		18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	POLR3D	P05423	398 aa	Predicted RBP	18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	SYK	P43405	635 aa		18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	TJP1	Q07157	1748 aa		18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	CPLX2	Q6PUV4	134 aa	Known RBP	18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	MAP3K15	Q6ZN16	1313 aa		18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	CHST3	Q7LGC8	479 aa		18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	ERCC4	Q92889	916 aa	Predicted RBP	18.8	■□□□□ 0.6
SHMT2-231	ENST00000557433	TTC39A	Q5SRH9	613 aa		18.79	■□□□□ 0.6
SHMT2-231	ENST00000557433	TTLL5	Q6EMB2	1281 aa		18.79	■□□□□ 0.6
SHMT2-231	ENST00000557433	HOMER1	Q86YM7	354 aa		18.79	■□□□□ 0.6
SHMT2-231	ENST00000557433	NOL10	Q9BSC4	688 aa	Known RBP	18.79	■□□□□ 0.6
SHMT2-231	ENST00000557433	ZMYM6	O95789	1325 aa		18.79	■□□□□ 0.6
SHMT2-231	ENST00000557433		A0A0G2JLW4	131 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	ZNF213	O14771	459 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	FGA	P02671	866 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	UBASH3A	P57075	661 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	OLFM4	Q6UX06	510 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	DNAI1	Q9UI46	699 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	HOOK1	Q9UJC3	728 aa	Known RBP	18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433		V9GYY5	206 aa	Predicted RBP	18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	NWD2	Q9ULI1	1742 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	C1orf167	Q5SNV9	1468 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	COL18A1	P39060	1754 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	CYP27B1	O15528	508 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	TRDN	Q13061	729 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	WASHC4	Q2M389	1173 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	VSTM4	Q8IW00	320 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	UBXN4	Q92575	508 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	FBXW7	Q969H0	707 aa		18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	CCDC9	Q9Y3X0	531 aa	Known RBP	18.78	■□□□□ 0.6
SHMT2-231	ENST00000557433	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	18.77	■□□□□ 0.6
SHMT2-231	ENST00000557433	ERCC6L	Q2NKX8	1250 aa		18.77	■□□□□ 0.6
SHMT2-231	ENST00000557433	LRRC24	Q50LG9	513 aa		18.77	■□□□□ 0.6
SHMT2-231	ENST00000557433	GORAB	Q5T7V8	394 aa		18.77	■□□□□ 0.6
SHMT2-231	ENST00000557433	OTUD7B	Q6GQQ9	843 aa		18.77	■□□□□ 0.6
SHMT2-231	ENST00000557433	MPHOSPH8	Q99549	860 aa		18.77	■□□□□ 0.6
SHMT2-231	ENST00000557433	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	18.77	■□□□□ 0.6	6e-7	■■□□□ 14.2
SHMT2-231	ENST00000557433	ZNF446	Q9NWS9	450 aa		18.77	■□□□□ 0.6
SHMT2-231	ENST00000557433	C4A	P0C0L4	1744 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	C4B	P0C0L5	1744 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	EFCAB8	A8MWE9	144 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	KIF28P	B7ZC32	967 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	BIN1	O00499	593 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	FOXP2	O15409	715 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	ARHGAP6	O43182	974 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	CUTA	O60888	179 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	SERPINC1	P01008	464 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	LMOD1	P29536	600 aa	Predicted RBP	18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	ANTXR2	P58335	489 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	ZC3H6	P61129	1189 aa	Known RBP	18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	FKBP4	Q02790	459 aa	Known RBP eCLIP	18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	RESP18	Q5W5W9	173 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	RBM33	Q96EV2	1170 aa	Known RBP	18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	ANGEL1	Q9UNK9	670 aa	Known RBP	18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	NBPF26	B4DH59	902 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	PIP4K2A	P48426	406 aa	Predicted RBP	18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	CCDC57	Q2TAC2	916 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	NBPF14	Q5TI25	921 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	NBPF10	Q6P3W6	841 aa	Known RBP	18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	NBPF15	Q8N660	670 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	MNS1	Q8NEH6	495 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	HSD3B7	Q9H2F3	369 aa		18.76	■□□□□ 0.59
SHMT2-231	ENST00000557433	WDHD1	O75717	1129 aa	Predicted RBP	18.75	■□□□□ 0.59
SHMT2-231	ENST00000557433	TOP1	P11387	765 aa	Known RBP	18.75	■□□□□ 0.59
SHMT2-231	ENST00000557433	CLCN6	P51797	869 aa		18.75	■□□□□ 0.59
SHMT2-231	ENST00000557433	ARHGAP29	Q52LW3	1261 aa		18.75	■□□□□ 0.59
SHMT2-231	ENST00000557433	TMCO3	Q6UWJ1	677 aa		18.75	■□□□□ 0.59
SHMT2-231	ENST00000557433	ALG1	Q9BT22	464 aa		18.75	■□□□□ 0.59
SHMT2-231	ENST00000557433	ATRN	O75882	1429 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	MROH7-TTC4	A0A0A0MT08	1334 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	CSB-PGBD3	P0DP91	1061 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	PTPA	Q15257	358 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	CCDC102B	Q68D86	513 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	TRIM65	Q6PJ69	517 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	VPS37D	Q86XT2	251 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	XAGE2	Q96GT9	111 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	TMEM87B	Q96K49	555 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	ZNF512B	Q96KM6	892 aa	Predicted RBP	18.74	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms