RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 UBE4AQ14139 1066 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 WASHC4Q2M389 1173 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 SLFNL1Q499Z3 407 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 SLC9C2Q5TAH2 1124 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 NSUN7Q8NE18 718 aaKnown RBP12.67□□□□□ -0.38
USP4-214ENST00000491791 BRF1Q92994 677 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 CHAMP1Q96JM3 812 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 STRBPQ96SI9 672 aaKnown RBP12.67□□□□□ -0.38
USP4-214ENST00000491791 MTA3Q9BTC8 594 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 SCAND2PQ9GZW5 306 aaPredicted RBP12.67□□□□□ -0.38
USP4-214ENST00000491791 BCL2L12Q9HB09 334 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 CNPY2Q9Y2B0 182 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 TCHHQ07283 1943 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 TIAM2Q8IVF5 1701 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 CEP350Q5VT06 3117 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 GADD45BO75293 160 aaPredicted RBP12.66□□□□□ -0.38
USP4-214ENST00000491791 PDIA3P30101 505 aaKnown RBP12.66□□□□□ -0.38
USP4-214ENST00000491791 MCM5P33992 734 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 KRT85P78386 507 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 MAP3K12Q12852 859 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 FOXD4L5Q5VV16 416 aaPredicted RBP12.66□□□□□ -0.38
USP4-214ENST00000491791 PI16Q6UXB8 463 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 NCOA7Q8NI08 942 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 FOXD4L4Q8WXT5 416 aaPredicted RBP12.66□□□□□ -0.38
USP4-214ENST00000491791 TCEANC2Q96MN5 208 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 SEC31BQ9NQW1 1179 aa12.66□□□□□ -0.38
USP4-214ENST00000491791 ZNF532Q9HCE3 1301 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 PATL2C9JE40 543 aaKnown RBP12.65□□□□□ -0.38
USP4-214ENST00000491791 ZNF213O14771 459 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 SEMA3EO15041 775 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 CTDNEP1O95476 244 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 GNAT2P19087 354 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 NASPP49321 788 aaPredicted RBP12.65□□□□□ -0.38
USP4-214ENST00000491791 CHRNDQ07001 517 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 CCDC173Q0VFZ6 552 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 RASGRF1Q13972 1273 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 CCDC183Q5T5S1 534 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 TTLL5Q6EMB2 1281 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 PDLIM2Q96JY6 352 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 PANK2Q9BZ23 570 aa12.65□□□□□ -0.38
USP4-214ENST00000491791 UBR3Q6ZT12 1888 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 DHX16O60231 1041 aaKnown RBP12.64□□□□□ -0.39
USP4-214ENST00000491791 DNM1Q05193 864 aaKnown RBP12.64□□□□□ -0.39
USP4-214ENST00000491791 RESTQ13127 1097 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 ERFEQ4G0M1 354 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 HS1BP3Q53T59 392 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 CDC37L1Q7L3B6 337 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 AMIGO3Q86WK7 504 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 FAM184AQ8NB25 1140 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 ZNF526Q8TF50 670 aaPredicted RBP12.64□□□□□ -0.39
USP4-214ENST00000491791 RBM27Q9P2N5 1060 aaKnown RBP12.64□□□□□ -0.39
USP4-214ENST00000491791 RTCBQ9Y3I0 505 aaKnown RBP12.64□□□□□ -0.39
USP4-214ENST00000491791 NID2Q14112 1375 aa12.64□□□□□ -0.39
USP4-214ENST00000491791 A0A0G2JLW4 131 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 VPS37CA5D8V6 355 aaPredicted RBP12.63□□□□□ -0.39
USP4-214ENST00000491791 MMP10P09238 476 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 ADRA2BP18089 450 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 ANTXR2P58335 489 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 FGD1P98174 961 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 APOBRQ0VD83 1088 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 UVSSAQ2YD98 709 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 TRAPPC3LQ5T215 181 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 ANKRD18AQ8IVF6 992 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 TMEM87BQ96K49 555 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 NBPF3Q9H094 633 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 RBSNQ9H1K0 784 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 GNL3LQ9NVN8 582 aaKnown RBP12.63□□□□□ -0.39
USP4-214ENST00000491791 WWC3Q9ULE0 1092 aa12.63□□□□□ -0.39
USP4-214ENST00000491791 MYO5AQ9Y4I1 1855 aaKnown RBP12.63□□□□□ -0.39
USP4-214ENST00000491791 COL4A1P02462 1669 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 PRC1O43663 620 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 JAK2O60674 1132 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 IDH1O75874 414 aaKnown RBP12.62□□□□□ -0.39
USP4-214ENST00000491791 RCAN1P53805 252 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 SMIM5Q71RC9 77 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 FBXO33Q7Z6M2 555 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 TTC6Q86TZ1 520 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 SGMS1Q86VZ5 419 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 NLGN1Q8N2Q7 840 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 MINPP1Q9UNW1 487 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 HPS5Q9UPZ3 1129 aa12.62□□□□□ -0.39
USP4-214ENST00000491791 SYCE3A1L190 88 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 PTPDC1A2A3K4 754 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 HSPA6P17066 643 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 ADD1P35611 737 aaKnown RBP12.61□□□□□ -0.39
USP4-214ENST00000491791 LIFRP42702 1097 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 TGFB2P61812 414 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 TRDNQ13061 729 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 STK3Q13188 491 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 TBC1D9BQ66K14 1250 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 TPTE2Q6XPS3 522 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 RALYLQ86SE5 291 aaKnown RBP12.61□□□□□ -0.39
USP4-214ENST00000491791 HELBQ8NG08 1087 aaPredicted RBP12.61□□□□□ -0.39
USP4-214ENST00000491791 SETDB2Q96T68 719 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 FUCA2Q9BTY2 467 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 ANKRD2Q9GZV1 360 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 TSPY26PQ9H489 355 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 CNNM2Q9H8M5 875 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 GDPD2Q9HCC8 539 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 ANAPC4Q9UJX5 808 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms