RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 CSPP1Q1MSJ5 1256 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 CCDC93Q567U6 631 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 DNAJC5GQ8N7S2 189 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 TSC1Q92574 1164 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 SCYL1Q96KG9 808 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 DHX8Q14562 1220 aaKnown RBP6.54□□□□□ -1.36
CCDC39-205ENST00000485055 KIF6Q6ZMV9 814 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 CHST12Q9NRB3 414 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 RNF19AQ9NV58 838 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 TPX2Q9ULW0 747 aaKnown RBP6.54□□□□□ -1.36
CCDC39-205ENST00000485055 COL4A5P29400 1685 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 ABCB7O75027 752 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 BBOX1O75936 387 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 ODR4Q5SWX8 454 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 SP8Q8IXZ3 490 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 IER2Q9BTL4 223 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 PLA2G12BQ9BX93 195 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 DBF4Q9UBU7 674 aaPredicted RBP6.54□□□□□ -1.36
CCDC39-205ENST00000485055 ADAMTS8Q9UP79 889 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 CTDP1Q9Y5B0 961 aaPredicted RBP6.54□□□□□ -1.36
CCDC39-205ENST00000485055 COL4A1P02462 1669 aa6.54□□□□□ -1.36
CCDC39-205ENST00000485055 ABCC12Q96J65 1359 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 ZNF521Q96K83 1311 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 PASKQ96RG2 1323 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 CHRNA5P30532 468 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 CLCN1P35523 988 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 HLFQ16534 295 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 GLIPR1L2Q4G1C9 344 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 C1orf131Q8NDD1 294 aaKnown RBP6.53□□□□□ -1.36
CCDC39-205ENST00000485055 ATL2Q8NHH9 583 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 SENP7Q9BQF6 1050 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 BCS1LQ9Y276 419 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 PRAMEF22A3QJZ6 481 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 OSBPP22059 807 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 MNX1P50219 401 aaPredicted RBP6.53□□□□□ -1.36
CCDC39-205ENST00000485055 TTC39BQ5VTQ0 682 aaPredicted RBP6.53□□□□□ -1.36
CCDC39-205ENST00000485055 PRPF40BQ6NWY9 871 aaKnown RBP6.53□□□□□ -1.36
CCDC39-205ENST00000485055 ARHGAP27Q6ZUM4 889 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 SMC1BQ8NDV3 1235 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 SUPT20HQ8NEM7 779 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 RBM17Q96I25 401 aaKnown RBP6.53□□□□□ -1.36
CCDC39-205ENST00000485055 NEUROD6Q96NK8 337 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 OSBPL2Q9H1P3 480 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 TSPYL4Q9UJ04 414 aa6.53□□□□□ -1.36
CCDC39-205ENST00000485055 AP1G2O75843 785 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 LDHAP00338 332 aaKnown RBP6.52□□□□□ -1.37
CCDC39-205ENST00000485055 HSD3B2P26439 372 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 QPCTQ16769 361 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 NLRP10Q86W26 655 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 NBPF5PQ86XG9 351 aaPredicted RBP6.52□□□□□ -1.37
CCDC39-205ENST00000485055 BSDC1Q9NW68 430 aaPredicted RBP6.52□□□□□ -1.37
CCDC39-205ENST00000485055 SWAP70Q9UH65 585 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 ATP6V0A2Q9Y487 856 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 PPP1R3GB7ZBB8 358 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 VEGFAP15692 232 aaPredicted RBP6.52□□□□□ -1.37
CCDC39-205ENST00000485055 DCTN1Q14203 1278 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 PPP2R2DQ66LE6 453 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 WDR75Q8IWA0 830 aaKnown RBP6.52□□□□□ -1.37
CCDC39-205ENST00000485055 TTC30BQ8N4P2 665 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 INO80BQ9C086 356 aaPredicted RBP6.52□□□□□ -1.37
CCDC39-205ENST00000485055 TAOK3Q9H2K8 898 aa6.52□□□□□ -1.37
CCDC39-205ENST00000485055 NIP7Q9Y221 180 aaKnown RBP eCLIP6.52□□□□□ -1.37
CCDC39-205ENST00000485055 GOLGA6CA6NDK9 693 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 GOLGA6BA6NDN3 693 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 GOLGA6DP0CG33 693 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 NDUFV2P19404 249 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 ZNF211Q13398 564 aaPredicted RBP6.51□□□□□ -1.37
CCDC39-205ENST00000485055 WDR43Q15061 677 aaKnown RBP eCLIP6.51□□□□□ -1.37
CCDC39-205ENST00000485055 SYCP2LQ5T4T6 812 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 SUSD4Q5VX71 490 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 TMEM87AQ8NBN3 555 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 HHIPL1Q96JK4 782 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 UTP14AQ9BVJ6 771 aaKnown RBP6.51□□□□□ -1.37
CCDC39-205ENST00000485055 GOLGA6AQ9NYA3 693 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 PAPPA2Q9BXP8 1791 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 PDGFRBP09619 1106 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 FAM161AQ3B820 660 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 PPP1R15BQ5SWA1 713 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 C15orf52Q6ZUT6 534 aaKnown RBP6.51□□□□□ -1.37
CCDC39-205ENST00000485055 GPC2Q8N158 579 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 CCDC191Q8NCU4 936 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 PAGR1Q9BTK6 254 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 ANP32EQ9BTT0 268 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 BRINP2Q9C0B6 783 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 FAM217BQ9NTX9 383 aaPredicted RBP6.51□□□□□ -1.37
CCDC39-205ENST00000485055 NOVA2Q9UNW9 492 aaKnown RBP6.51□□□□□ -1.37
CCDC39-205ENST00000485055 IQCA1LA6NCM1 817 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 RBL2Q08999 1139 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 UBE4AQ14139 1066 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 TTLL7Q6ZT98 887 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 HMX1Q9NP08 348 aaPredicted RBP6.51□□□□□ -1.37
CCDC39-205ENST00000485055 MBIPQ9NS73 344 aa6.51□□□□□ -1.37
CCDC39-205ENST00000485055 TNFRSF10BO14763 440 aa6.5□□□□□ -1.37
CCDC39-205ENST00000485055 PCCAP05165 728 aaPredicted RBP6.5□□□□□ -1.37
CCDC39-205ENST00000485055 MAPK1P28482 360 aa6.5□□□□□ -1.37
CCDC39-205ENST00000485055 IARSP41252 1262 aaKnown RBP6.5□□□□□ -1.37
CCDC39-205ENST00000485055 DDX10Q13206 875 aaKnown RBP6.5□□□□□ -1.37
CCDC39-205ENST00000485055 SLC39A13Q96H72 371 aa6.5□□□□□ -1.37
CCDC39-205ENST00000485055 RNF181Q9P0P0 153 aa6.5□□□□□ -1.37
CCDC39-205ENST00000485055 SH3BP1Q9Y3L3 701 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms