RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 XRCC6P12956 609 aaKnown RBP eCLIP4.04□□□□□ -1.76
UBR3-208ENST00000474426 ATF7P17544 494 aaPredicted RBP4.04□□□□□ -1.76
UBR3-208ENST00000474426 GNAT2P19087 354 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 CCNCP24863 283 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 KIF5BP33176 963 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 MASP1P48740 699 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 CCNHP51946 323 aaPredicted RBP4.04□□□□□ -1.76
UBR3-208ENST00000474426 NUCB1Q02818 461 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 TAF7Q15545 349 aaPredicted RBP4.04□□□□□ -1.76
UBR3-208ENST00000474426 OR8H2Q8N162 312 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 ZNF483Q8TF39 744 aaPredicted RBP4.04□□□□□ -1.76
UBR3-208ENST00000474426 SKA1Q96BD8 255 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 SH3GL3Q99963 347 aa4.04□□□□□ -1.76
UBR3-208ENST00000474426 REPIN1Q9BWE0 567 aaKnown RBP4.04□□□□□ -1.76
UBR3-208ENST00000474426 NOSIPQ9Y314 301 aaKnown RBP4.04□□□□□ -1.76
UBR3-208ENST00000474426 PYGBP11216 843 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 EPB42P16452 691 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 STT3AP46977 705 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 CYP4A11Q02928 519 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 ANKRD39Q53RE8 183 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 HYIQ5T013 277 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 LVRNQ6Q4G3 990 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 CEP68Q76N32 757 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 METTL3Q86U44 580 aaKnown RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 KCT2Q8NC54 265 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 UIMC1Q96RL1 719 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 CWC15Q9P013 229 aaKnown RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 MAPK8IP1Q9UQF2 711 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SNX5Q9Y5X3 404 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SNX2O60749 519 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 EIF4BP23588 611 aaKnown RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 HPDP32754 393 aaPredicted RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 MAP2K2P36507 400 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SKIV2L2P42285 1042 aaKnown RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 GRIK3Q13003 919 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 CLPPQ16740 277 aaPredicted RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 HNRNPUL2Q1KMD3 747 aaKnown RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 ZC3H12BQ5HYM0 836 aaKnown RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 ABTB2Q8N961 1025 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 MTMR14Q8NCE2 650 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 BICD2Q8TD16 824 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 ARMC5Q96C12 935 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 RBM18Q96H35 190 aaKnown RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 GPR101Q96P66 508 aaPredicted RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.03□□□□□ -1.76
UBR3-208ENST00000474426 PRKRIP1Q9H875 184 aaPredicted RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 CAPN10Q9HC96 672 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 MAGED1Q9Y5V3 778 aaPredicted RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 KANK1Q14678 1352 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 NCKAP5LQ9HCH0 1330 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SMC2O95347 1197 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 PAHP00439 452 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SLC4A1P02730 911 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 HOXD11P31277 338 aaPredicted RBP4.03□□□□□ -1.76
UBR3-208ENST00000474426 ROR1Q01973 937 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 LRRC49Q8IUZ0 686 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 LINC00469Q8N7U9 141 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SUN5Q8TC36 379 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SCLT1Q96NL6 688 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 SEMA4AQ9H3S1 761 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 C12orf49Q9H741 205 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 TRAK1Q9UPV9 953 aa4.03□□□□□ -1.76
UBR3-208ENST00000474426 MUSKO15146 869 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 ARIH2O95376 493 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 TNFAIP3P21580 790 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 INPP5BP32019 993 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 MATR3P43243 847 aaKnown RBP eCLIP4.02□□□□□ -1.77
UBR3-208ENST00000474426 ITIH3Q06033 890 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 ADCY1Q08828 1119 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 MRPL28Q13084 256 aaKnown RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 MPP3Q13368 585 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 GNPTABQ3T906 1256 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 FAM133BQ5BKY9 247 aaKnown RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 CCDC80Q76M96 950 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 CATSPER4Q7RTX7 472 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 PNMA8AQ86V59 439 aaPredicted RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 JAMLQ86YT9 394 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 SLC35B4Q969S0 331 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 JAKMIP2Q96AA8 810 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 CEP95Q96GE4 821 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 RSRC1Q96IZ7 334 aaKnown RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 PHACTR1Q9C0D0 580 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 TCF7L2Q9NQB0 619 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 SAGE1Q9NXZ1 904 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 KIAA1468Q9P260 1216 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 IPPQ9Y573 584 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 FAM221BA6H8Z2 402 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 BTBD11A6QL63 1104 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 M0QX08 132 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 KIF2AO00139 706 aaPredicted RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 SCAMP3O14828 347 aaKnown RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 ABL1P00519 1130 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 SEPT7Q16181 437 aaKnown RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 PPP4R4Q6NUP7 873 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 SPATS2Q86XZ4 545 aaKnown RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 SPICE1Q8N0Z3 855 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 RELTQ969Z4 430 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 TRMT2BQ96GJ1 504 aaKnown RBP4.02□□□□□ -1.77
UBR3-208ENST00000474426 SMYD2Q9NRG4 433 aa4.02□□□□□ -1.77
UBR3-208ENST00000474426 CEP131Q9UPN4 1083 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms