RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 MYLK4Q86YV6 388 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 ZNF710Q8N1W2 664 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 ZBTB10Q96DT7 871 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 CCDC42Q96M95 316 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 FCHSD2O94868 740 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 IDEP14735 1019 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 RAP1GDS1P52306 607 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 CRYMQ14894 314 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 CACTINQ8WUQ7 758 aaKnown RBP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 TTC1Q99614 292 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 DDX28Q9NUL7 540 aaKnown RBP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 ZNF189O75820 626 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 CHGBP05060 677 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 GJB2P29033 226 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 MYO1EQ12965 1108 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 ZNF449Q6P9G9 518 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 NDEL1Q9GZM8 345 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 WWC3Q9ULE0 1092 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 FAM169AQ9Y6X4 670 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 ARHGAP42A6NI28 874 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 APBA1Q02410 837 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 SYCP3Q8IZU3 236 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.05□□□□□ -0.8
COL6A3-210ENST00000473258 BICC1Q9H694 974 aaKnown RBP10.05□□□□□ -0.8
COL6A3-210ENST00000473258 HOMER3Q9NSC5 361 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 RHBDL2Q9NX52 303 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 DMRT2Q9Y5R5 561 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 USP47Q96K76 1375 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 ACTN4O43707 911 aaKnown RBP10.05□□□□□ -0.8
COL6A3-210ENST00000473258 WBP4O75554 376 aaKnown RBP10.05□□□□□ -0.8
COL6A3-210ENST00000473258 TSPAN9O75954 239 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 SLC8A3P57103 927 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 CNGA4Q8IV77 575 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 LZTS1Q9Y250 596 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 ARHGAP10A1A4S6 786 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 SUN1O94901 812 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 CLUL1Q15846 466 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 C8orf76Q96K31 380 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 NEUROD6Q96NK8 337 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 FAM167BQ9BTA0 163 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 DIABLOQ9NR28 239 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 IMPACTQ9P2X3 320 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 OCA2Q04671 838 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 RABGGTAQ92696 567 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 MPP4Q96JB8 637 aa10.05□□□□□ -0.8
COL6A3-210ENST00000473258 ECM2O94769 699 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-210ENST00000473258 ZNF75DP51815 510 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 PMS1P54277 932 aaKnown RBP10.04□□□□□ -0.8
COL6A3-210ENST00000473258 KIAA0825Q8IV33 1275 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 PHAXQ9H814 394 aaKnown RBP10.04□□□□□ -0.8
COL6A3-210ENST00000473258 POLE3Q9NRF9 147 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 ARHGAP6O43182 974 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 ZSCAN20P17040 1043 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-210ENST00000473258 ATF7IPQ6VMQ6 1270 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 TLK2Q86UE8 772 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 TRIM42Q8IWZ5 723 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 ZSCAN16Q9H4T2 348 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-210ENST00000473258 VPS8Q8N3P4 1428 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 E9PMD0 336 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 SLC4A7Q9Y6M7 1214 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 EIF2S2P20042 333 aaKnown RBP10.04□□□□□ -0.8
COL6A3-210ENST00000473258 LONRF2Q1L5Z9 754 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 NLRP7Q8WX94 980 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 STX2P32856 288 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 TRIML2Q8N7C3 387 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 PNISRQ8TF01 805 aaKnown RBP10.04□□□□□ -0.8
COL6A3-210ENST00000473258 STAMBPL1Q96FJ0 436 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 TRAIPQ9BWF2 469 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 PLEKHA4Q9H4M7 779 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 ADAM21Q9UKJ8 722 aa10.04□□□□□ -0.8
COL6A3-210ENST00000473258 G3V3G9 751 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 DCAF8Q5TAQ9 597 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 HEATR3Q7Z4Q2 680 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 TMX3Q96JJ7 454 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 GDAP1L1Q96MZ0 367 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 CARD10Q9BWT7 1032 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 DBNLQ9UJU6 430 aaKnown RBP10.03□□□□□ -0.8
COL6A3-210ENST00000473258 NPHP3Q7Z494 1330 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 SH3BP5O60239 455 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 DDX58O95786 925 aaKnown RBP10.03□□□□□ -0.8
COL6A3-210ENST00000473258 KRT8P05787 483 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 KRT5P13647 590 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 RSPH3Q86UC2 560 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 GNAT2P19087 354 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 ETF1P62495 437 aaKnown RBP10.03□□□□□ -0.8
COL6A3-210ENST00000473258 HDGFL1Q5TGJ6 251 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 CWC27Q6UX04 472 aaKnown RBP10.03□□□□□ -0.8
COL6A3-210ENST00000473258 SH3GL1Q99961 368 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 OSBPL1AQ9BXW6 950 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 ANGPTL3Q9Y5C1 460 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 GOLGA8AA7E2F4 631 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 GOLGA8BA8MQT2 603 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 AKR1B15C9JRZ8 316 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-210ENST00000473258 GNAI2P04899 355 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 PDHA1P08559 390 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 DMPKQ09013 629 aa10.03□□□□□ -0.8
COL6A3-210ENST00000473258 ZC3H18Q86VM9 953 aaKnown RBP10.03□□□□□ -0.8
COL6A3-210ENST00000473258 TRIM66O15016 1216 aa10.02□□□□□ -0.8
COL6A3-210ENST00000473258 PNMA6AP0CW24 399 aaPredicted RBP10.02□□□□□ -0.8
COL6A3-210ENST00000473258 SERPINB6P35237 376 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms