RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	CDC25B	P30305	580 aa		19.77	■□□□□ 0.75
TOM1-210	ENST00000449058	OTUD7B	Q6GQQ9	843 aa		19.77	■□□□□ 0.75
TOM1-210	ENST00000449058	CCDC186	Q7Z3E2	898 aa		19.77	■□□□□ 0.75
TOM1-210	ENST00000449058	LINC00301	Q8NCQ3	95 aa		19.77	■□□□□ 0.75
TOM1-210	ENST00000449058	CCDC102B	Q68D86	513 aa		19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	BRAP	Q7Z569	592 aa		19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	MRPS27	Q92552	414 aa	Known RBP	19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	POLR3E	Q9NVU0	708 aa		19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	DOCK2	Q92608	1830 aa		19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	YEATS4	O95619	227 aa		19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	GTF2F1	P35269	517 aa	Known RBP eCLIP	19.76	■□□□□ 0.75	2e-7	■■■■■ 40.4
TOM1-210	ENST00000449058	IL6ST	P40189	918 aa	Predicted RBP	19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	TBC1D10C	Q8IV04	446 aa		19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	ZNF34	Q8IZ26	560 aa		19.76	■□□□□ 0.75
TOM1-210	ENST00000449058	UBN2	Q6ZU65	1347 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	SLIT2	O94813	1529 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	TCRBV5S4A2T	A0A5A2	114 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	UQCRFS1P1	P0C7P4	283 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	FGFR2	P21802	821 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	PHKA1	P46020	1223 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	MAP7D2	Q96T17	732 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	NRBP1	Q9UHY1	535 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	CPLX1	O14810	134 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	PDE6A	P16499	860 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	TRDN	Q13061	729 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	DZIP3	Q86Y13	1208 aa	Known RBP	19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	KCNG4	Q8TDN1	519 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	FAM13B	Q9NYF5	915 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	ANGEL1	Q9UNK9	670 aa	Known RBP	19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	CLIC4	Q9Y696	253 aa		19.75	■□□□□ 0.75
TOM1-210	ENST00000449058	ZNF532	Q9HCE3	1301 aa		19.74	■□□□□ 0.75
TOM1-210	ENST00000449058	MYSM1	Q5VVJ2	828 aa		19.74	■□□□□ 0.75
TOM1-210	ENST00000449058	DRC7	Q8IY82	874 aa		19.74	■□□□□ 0.75
TOM1-210	ENST00000449058	ANO10	Q9NW15	660 aa		19.74	■□□□□ 0.75
TOM1-210	ENST00000449058	ZMYM6	O95789	1325 aa		19.74	■□□□□ 0.75
TOM1-210	ENST00000449058	ECM29	Q5VYK3	1845 aa		19.74	■□□□□ 0.75
TOM1-210	ENST00000449058	GOLGA6L19	H0YKK7	550 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	IDH1	O75874	414 aa	Known RBP	19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	PUM3	Q15397	648 aa	Known RBP	19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	CYB5R4	Q7L1T6	521 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	RAB11FIP4	Q86YS3	637 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	NKX2-3	Q8TAU0	364 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	LPIN2	Q92539	896 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	AK7	Q96M32	723 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	DENND2A	Q9ULE3	1009 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	MROH5	Q6ZUA9	1318 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	DOT1L	Q8TEK3	1739 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	KAT6B	Q8WYB5	2073 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	SH2B2	O14492	632 aa	Predicted RBP	19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	KIF23	Q02241	960 aa	Predicted RBP	19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	STK38	Q15208	465 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	MRFAP1L1	Q96HT8	127 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	CLIP2	Q9UDT6	1046 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	TBC1D2B	Q9UPU7	963 aa		19.73	■□□□□ 0.75
TOM1-210	ENST00000449058	POLR3D	P05423	398 aa	Predicted RBP	19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	ALX1	Q15699	326 aa		19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	DHX40	Q8IX18	779 aa	Known RBP	19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	WWC3	Q9ULE0	1092 aa		19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	CHD4	Q14839	1912 aa		19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	KIF28P	B7ZC32	967 aa		19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	LRMP	Q12912	555 aa		19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	STRBP	Q96SI9	672 aa	Known RBP	19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	GJB4	Q9NTQ9	266 aa		19.72	■□□□□ 0.75
TOM1-210	ENST00000449058	SPTLC2	O15270	562 aa		19.71	■□□□□ 0.75
TOM1-210	ENST00000449058	NDUFA8	P51970	172 aa		19.71	■□□□□ 0.75
TOM1-210	ENST00000449058	COL16A1	Q07092	1604 aa	Predicted RBP	19.71	■□□□□ 0.75
TOM1-210	ENST00000449058	NEDD4	P46934	1319 aa		19.71	■□□□□ 0.75
TOM1-210	ENST00000449058		A0A1B0GVL5	298 aa		19.71	■□□□□ 0.75
TOM1-210	ENST00000449058	EXOC5	O00471	708 aa		19.71	■□□□□ 0.75
TOM1-210	ENST00000449058	APP	P05067	770 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	SF3A1	Q15459	793 aa	Known RBP	19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	CCDC144B	Q3MJ40	725 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	APOA5	Q6Q788	366 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	MTERF4	Q7Z6M4	381 aa	Known RBP	19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	CCDC144CP	Q8IYA2	1237 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	CEP57L1	Q8IYX8	460 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	TMEM87B	Q96K49	555 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	TIAM2	Q8IVF5	1701 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	METAP2	P50579	478 aa	Known RBP eCLIP	19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	ANO1	Q5XXA6	986 aa		19.7	■□□□□ 0.74
TOM1-210	ENST00000449058	SYNE3	Q6ZMZ3	975 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	SPATA5	Q8NB90	893 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	IGDCC4	Q8TDY8	1250 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	SDF4	Q9BRK5	362 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	PHLPP1	O60346	1717 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	COL22A1	Q8NFW1	1626 aa	Predicted RBP	19.69	■□□□□ 0.74
TOM1-210	ENST00000449058		A0A087WWV3	80 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	BECN2	A8MW95	431 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058		B4E1Z4	1266 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	CDKL5	O76039	1030 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	EIF5	P55010	431 aa	Known RBP	19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	AXDND1	Q5T1B0	1012 aa	Predicted RBP	19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	HELB	Q8NG08	1087 aa	Predicted RBP	19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	CACTIN	Q8WUQ7	758 aa	Known RBP	19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	AIDA	Q96BJ3	306 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	SYTL4	Q96C24	671 aa	Predicted RBP	19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	PKNOX2	Q96KN3	472 aa		19.69	■□□□□ 0.74
TOM1-210	ENST00000449058	SLC5A1	P13866	664 aa		19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	NAT10	Q9H0A0	1025 aa	Known RBP	19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	KIAA1468	Q9P260	1216 aa		19.68	■□□□□ 0.74

Retrieved 100 of 20,778 RNA–protein pairs in 11 ms