RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 SPG7Q9UQ90 795 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 PPFIA3O75145 1194 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 CAVIN2O95810 425 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 EZRP15311 586 aaKnown RBP11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 POLD1P28340 1107 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 PSME1Q06323 249 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 ADCK5Q3MIX3 580 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 FKBP15Q5T1M5 1219 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 LARP1Q6PKG0 1096 aaKnown RBP11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 CEP57L1Q8IYX8 460 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 B4GALNT2Q8NHY0 566 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 TBC1D5Q92609 795 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 CFAP53Q96M91 514 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 YIPF2Q9BWQ6 316 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 TSGA10Q9BZW7 698 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 ARHGEF40Q8TER5 1519 aa11.02□□□□□ -0.65
PTCHD4-201ENST00000339488 TPD52L2O43399 206 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 ICA1Q05084 483 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 LAMB3Q13751 1172 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 SNCBQ16143 134 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 SPRED3Q2MJR0 410 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 PDILTQ8N807 584 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 FAM76AQ8TAV0 307 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 NUP133Q8WUM0 1156 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 HNRNPLLQ8WVV9 542 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 MEIS3Q99687 375 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 SLC12A5Q9H2X9 1139 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 MRPL44Q9H9J2 332 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 TPX2Q9ULW0 747 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 ABCC4O15439 1325 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 FCHSD2O94868 740 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 FSBPO95073 299 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 OATP04181 439 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 MAGEA10P43363 369 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 TMEM62Q0P6H9 643 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 ALDH1L2Q3SY69 923 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 KIAA0825Q8IV33 1275 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 ANKRD44Q8N8A2 993 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 EZH1Q92800 747 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 CAPS2Q9BXY5 557 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 HAUS2Q9NVX0 235 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 IMPACTQ9P2X3 320 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 ABCA6Q8N139 1617 aa11.01□□□□□ -0.65
PTCHD4-201ENST00000339488 GOLGA6CA6NDK9 693 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 PPFIA2O75334 1257 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 GOLGA6DP0CG33 693 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 HSPA4P34932 840 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 ATP1A2P50993 1020 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 CDR1P51861 262 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 SF3B2Q13435 895 aaKnown RBP11□□□□□ -0.65
PTCHD4-201ENST00000339488 GOLGA6AQ9NYA3 693 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 RAB21Q9UL25 225 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 HECW2Q9P2P5 1572 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 EIF3HO15372 352 aaKnown RBP eCLIP11□□□□□ -0.657e-9■■□□□ 12.4
PTCHD4-201ENST00000339488 VAMP4O75379 141 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 MYO1EQ12965 1108 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 GNPTABQ3T906 1256 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 CAPRIN2Q6IMN6 1127 aaKnown RBP11□□□□□ -0.65
PTCHD4-201ENST00000339488 CCAR1Q8IX12 1150 aaKnown RBP11□□□□□ -0.65
PTCHD4-201ENST00000339488 LRRCC1Q9C099 1032 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 HYPKQ9NX55 129 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 CHCHD3Q9NX63 227 aaKnown RBP11□□□□□ -0.65
PTCHD4-201ENST00000339488 ADCY9O60503 1353 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 ATP10DQ9P241 1426 aa11□□□□□ -0.65
PTCHD4-201ENST00000339488 MEFVO15553 781 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 SHOX2O60902 331 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 RASSF9O75901 435 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 NBPF7P0C2Y1 421 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 PRPF40BQ6NWY9 871 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 PARP9Q8IXQ6 854 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 STAMBPL1Q96FJ0 436 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 JAKMIP1Q96N16 626 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 HPCAL4Q9UM19 191 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 PLA2R1Q13018 1463 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 IFT88Q13099 833 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 AKNAD1Q5T1N1 836 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 MEX3CQ5U5Q3 659 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 OR8K1Q8NGG5 319 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 EPAS1Q99814 870 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 ANO10Q9NW15 660 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 FANCLQ9NW38 375 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 ADKP55263 362 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 PDCD2Q16342 344 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 NCAPH2Q6IBW4 605 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 CYB5D1Q6P9G0 228 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 MSANTD4Q8NCY6 345 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 NSMCE1Q8WV22 266 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 SCAND2PQ9GZW5 306 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 SUDS3Q9H7L9 328 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 RIPOR2Q9Y4F9 1068 aa10.99□□□□□ -0.65
PTCHD4-201ENST00000339488 TMCO5BA8MYB1 307 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 ZSCAN12O43309 604 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 TTLL7Q6ZT98 887 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 ACRBPQ8NEB7 543 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 PCDHGA4Q9Y5G9 962 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 SPDYE3A6NKU9 549 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 MAP3K13O43283 966 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 CCP110O43303 1012 aa10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 TPP2P29144 1249 aaPredicted RBP10.98□□□□□ -0.65
PTCHD4-201ENST00000339488 FANCCQ00597 558 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms