RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 JKAMPQ9P055 326 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 AK3Q9UIJ7 227 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 LSM2Q9Y333 95 aaKnown RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 KLK5Q9Y337 293 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 TM4SF5O14894 197 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 CTF1Q16619 201 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 LHFPL5Q8TAF8 219 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF696Q9H7X3 374 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 GIPP09681 153 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 FABP9Q0Z7S8 132 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 EXOSC2Q13868 293 aaKnown RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 LCNL1Q6ZST4 164 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 LRP11Q86VZ4 500 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 SGMS2Q8NHU3 365 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 C1QTNF4Q9BXJ3 329 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 NRN1Q9NPD7 142 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 TRGV2A0A075B6R0 118 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 NEURL1O76050 574 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 SOD3P08294 240 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PGA4P0DJD7 388 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PGA5P0DJD9 388 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PTGDSP41222 190 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 TCL1AP56279 114 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PIGPP57054 158 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PEAR1Q5VY43 1037 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 OTPQ5XKR4 325 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 OR10Z1Q8NGY1 313 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 G6PC2Q9NQR9 355 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 OR5AC2Q9NZP5 309 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 SPRR3Q9UBC9 169 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 KCNE3Q9Y6H6 103 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 DUS4LO95620 317 aaKnown RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF688P0C7X2 276 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 NPBWR2P48146 333 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 KIAA0141Q14154 515 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 CEACAM21Q3KPI0 293 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 FAM169BQ8N8A8 192 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 NDUFB11Q9NX14 153 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 THSD7BQ9C0I4 1608 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 C2orf16Q68DN1 1984 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 LINC01549A6NIU2 74 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 H3BUX3 64 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 F12P00748 615 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 APOC4P55056 127 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 HIST3H3Q16695 136 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM78Q5T7P6 136 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PPP1R27Q86WC6 154 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RHOXF1Q8NHV9 184 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 SLC25A46Q96AG3 418 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 SMIM7Q9BQ49 75 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 UFC1Q9Y3C8 167 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 CHCHD2Q9Y6H1 151 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 TRAV9-2A0A087WT02 112 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RBMY1BA6NDE4 496 aaKnown RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 MBD3L4A6NDZ8 208 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 MBD3L3A6NE82 208 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RBMY1EA6NEQ0 496 aaKnown RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 MBD3L5A6NJ08 208 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 GREM1O60565 184 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 CD5P06127 495 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RBMY1DP0C7P1 496 aaKnown RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RBMY1A1P0DJD3 496 aaKnown RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RBMY1CP0DJD4 496 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 LCN12Q6JVE5 192 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 MBD3L2Q8NHZ7 208 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RBPMSQ93062 196 aaKnown RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PLXNA3P51805 1871 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 LINC00587B1AMM8 73 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 TRDCB7Z8K6 153 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PRSS23O95084 383 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 LPAR6P43657 344 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF137PP52743 207 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 P2RX3P56373 397 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 CLDN18P56856 261 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 BPIFA4PQ86YQ2 179 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 GPX7Q96SL4 187 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PLSCR4Q9NRQ2 329 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PSENENQ9NZ42 101 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 SIGLEC7Q9Y286 467 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 CD1BP29016 333 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 CEBPDP49716 269 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 LHX2P50458 406 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 ETV3LQ6ZN32 361 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 OR10S1Q8NGN2 331 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM235A6NFC5 223 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 H7C1H1 209 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 TSPAN13O95857 204 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 IGKV1D-33P01593 117 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 IGKV1-33P01594 117 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 PRSS1P07477 247 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 RPS20P60866 119 aaKnown RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 APOOLQ6UXV4 268 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 EAF1Q96JC9 268 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-218ENST00000640036 DERL3Q96Q80 235 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 MGST2Q99735 147 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 GABARAPL3Q9BY60 117 aa4.29□□□□□ -1.72
SCN1A-218ENST00000640036 IL13RA2Q14627 380 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 PRR27Q6MZM9 219 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 APCDD1LQ8NCL9 501 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 OR5AP2Q8NGF4 316 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms