RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 DIRAS3O95661 229 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 RRASP10301 218 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 LYL1P12980 280 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 GNB3P16520 340 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 AADACP22760 399 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 CRHBPP24387 322 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 MAP2K4P45985 399 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 KLF5Q13887 457 aaPredicted RBP8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 TATDN3Q17R31 274 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 OR9G4Q8NGQ1 327 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 MAFIPQ8WZ33 124 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 CITED4Q96RK1 184 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 TM2D3Q9BRN9 247 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 GINS4Q9BRT9 223 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 PEF1Q9UBV8 284 aaKnown RBP8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 ZNF230Q9UIE0 474 aaPredicted RBP8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 MSGN1A6NI15 193 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 SRRM4A7MD48 611 aaKnown RBP8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 A8MZ25 164 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 H0Y980 276 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 APELAP0DMC3 54 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 HIST1H1DP16402 221 aaKnown RBP8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 TALDO1P37837 337 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 HSPA13P48723 471 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 SYNJ2BPP57105 145 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 DEFA5Q01523 94 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 ARFRP1Q13795 201 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 TNXAQ16473 311 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 VMA21Q3ZAQ7 101 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 ZNF343Q6P1L6 599 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 TEX45Q8NA69 505 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 C5orf30Q96GV9 206 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 USMG5Q96IX5 58 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 ADTRPQ96IZ2 230 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 CENPOQ9BU64 300 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 Q9H521 79 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 C19orf73Q9NVV2 129 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 TNCP24821 2201 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 SACSQ9NZJ4 4579 aa8.46□□□□□ -1.06
CCDC88C-213ENST00000557455 RYR2Q92736 4967 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 STARD9Q9P2P6 4700 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 TRAV1-2A0A0B4J238 106 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 METTL21EPA6NDL7 271 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 IFITM5A6NNB3 132 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 RAB27BO00194 218 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 MFNGO00587 321 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 MPPED1O15442 326 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 CRYZL1O95825 349 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 OR9G9P0C7N8 305 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 RAB6AP20340 208 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 MYL9P24844 172 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 DUTP33316 252 aaKnown RBP8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 OR10A3P58181 314 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 UBE2KP61086 200 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 DYRK1AQ13627 763 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 TBCEQ15813 527 aaPredicted RBP8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 PRSS8Q16651 343 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 MRGPRG-AS1Q2M3A8 158 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 RPEL1Q2QD12 228 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 IL34Q6ZMJ4 242 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 IDO2Q6ZQW0 420 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 ACOT12Q8WYK0 555 aa8.45□□□□□ -1.06
CCDC88C-213ENST00000557455 TENM2Q9NT68 2774 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 A0A0B4J203 849 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 SHISA3A0PJX4 238 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 LINC00473A8K010 186 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 TRBV12-3P01733 135 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 CSN3P07498 182 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 RAB3BP20337 219 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 SSX1Q16384 188 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 Q6ZS49 121 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 ZNF367Q7RTV3 350 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 GTSCR1Q86UQ5 136 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 H1FOOQ8IZA3 346 aaPredicted RBP8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 ADAD2Q8NCV1 583 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 OSR1Q8TAX0 266 aaPredicted RBP8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 SRSF12Q8WXF0 261 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 DDB2Q92466 427 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 SNAPC3Q92966 411 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 ISOC1Q96CN7 298 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 SPATA25Q9BR10 227 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 ATG5Q9H1Y0 275 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 TUBA4BQ9H853 241 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 SIGLEC8Q9NYZ4 499 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 PEMTQ9UBM1 199 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 ADAM30Q9UKF2 790 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 BLOC1S6Q9UL45 172 aa8.44□□□□□ -1.06
CCDC88C-213ENST00000557455 IGKV1D-8A0A087WSZ0 117 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 TRDV1A0A1B0GX56 115 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 J3QRK9 145 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 CREBL2O60519 120 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 RBMXL2O75526 392 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 ACTL6BO94805 426 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 OR2A4O95047 310 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 ARL6IP1Q15041 203 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 ZFAND6Q6FIF0 208 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 LCN12Q6JVE5 192 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 Q8N402 240 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 CNBD2Q96M20 576 aa8.43□□□□□ -1.06
CCDC88C-213ENST00000557455 DCUN1D5Q9BTE7 237 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms