RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 THBS3P49746 956 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 TAGLNQ01995 201 aaKnown RBP15.66■□□□□ 0.1
CPSF1-209ENST00000532725 CDK10Q15131 360 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 LIN54Q6MZP7 749 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 DHRS11Q6UWP2 260 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 OVCH2Q7RTZ1 564 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 SNX29P2Q8IUI4 249 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 FOXRED2Q8IWF2 684 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 STPG2Q8N412 459 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 CHPT1Q8WUD6 406 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 DDB2Q92466 427 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 FLYWCH2Q96CP2 140 aaKnown RBP15.66■□□□□ 0.1
CPSF1-209ENST00000532725 SLC35D1Q9NTN3 355 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 CCDC59Q9P031 241 aaKnown RBP15.66■□□□□ 0.1
CPSF1-209ENST00000532725 ZNF107Q9UII5 783 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-209ENST00000532725 LINC00473A8K010 186 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 ADARB2-AS1A8MUL3 147 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 AP4M1O00189 453 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 SULT1C2O00338 296 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 RRHO14718 337 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 KCNAB3O43448 404 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 TPPPO94811 219 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 HLA-DRB1P01911 266 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 APOA2P02652 100 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 AADACP22760 399 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 RFX2P48378 723 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 RPS16P62249 146 aaKnown RBP15.65■□□□□ 0.1
CPSF1-209ENST00000532725 ZNF329Q86UD4 541 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 ADTRPQ96IZ2 230 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 KIAA1456Q9P272 454 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 EXTL2Q9UBQ6 330 aa15.65■□□□□ 0.1
CPSF1-209ENST00000532725 RBMX2Q9Y388 322 aaKnown RBP15.65■□□□□ 0.1
CPSF1-209ENST00000532725 PSMB11A5LHX3 300 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 FCN1O00602 326 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 NOL3O60936 208 aaKnown RBP15.64■□□□□ 0.09
CPSF1-209ENST00000532725 PPYP01298 95 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 EIF4EBP1Q13541 118 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-209ENST00000532725 PSG5Q15238 335 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 C2orf68Q2NKX9 166 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 ZNF660Q6AZW8 331 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-209ENST00000532725 TET2Q6N021 2002 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-209ENST00000532725 TREML4Q6UXN2 200 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 NDUFA11Q86Y39 141 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 BVESQ8NE79 360 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 ABHD1Q96SE0 405 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 FBXL15Q9H469 300 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 PLXNB1O43157 2135 aa15.64■□□□□ 0.09
CPSF1-209ENST00000532725 IGHV7-81A0A0B4J1V7 117 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 PMP2P02689 132 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 IGF1P05019 195 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 LGALS7P47929 136 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 DYRK1AQ13627 763 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 TMEM177Q53S58 311 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 LAX1Q8IWV1 398 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 TSNAXQ99598 290 aaKnown RBP15.63■□□□□ 0.09
CPSF1-209ENST00000532725 SLIRPQ9GZT3 109 aaKnown RBP15.63■□□□□ 0.09
CPSF1-209ENST00000532725 RBM38Q9H0Z9 239 aaKnown RBP15.63■□□□□ 0.09
CPSF1-209ENST00000532725 ZNF580Q9UK33 172 aa15.63■□□□□ 0.09
CPSF1-209ENST00000532725 SRRM4A7MD48 611 aaKnown RBP15.62■□□□□ 0.09
CPSF1-209ENST00000532725 RGS5O15539 181 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 TSPAN15O95858 294 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 IGLV2-23P01705 113 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 CSF1P09603 554 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 RRASP10301 218 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 HLA-DMAP28067 261 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 TAS2R46P59540 309 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 RPL30P62888 115 aaKnown RBP15.62■□□□□ 0.09
CPSF1-209ENST00000532725 MSMO1Q15800 293 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 NSUN5P1Q3KNT7 163 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 OR4X2Q8NGF9 303 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 OR51J1Q9H342 316 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 CCL28Q9NRJ3 127 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 EHFQ9NZC4 300 aa15.62■□□□□ 0.09
CPSF1-209ENST00000532725 TCRBV4S1A1TA0A5B7 111 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 SPDEFO95238 335 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 CRYGBP07316 175 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 RTL8BQ17RB0 113 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 OR5H2Q8NGV7 314 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 SECTM1Q8WVN6 248 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 GON7Q9BXV9 100 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 NXF2Q9GZY0 626 aaKnown RBP15.61■□□□□ 0.09
CPSF1-209ENST00000532725 MMP27Q9H306 513 aa15.61■□□□□ 0.09
CPSF1-209ENST00000532725 METTL1Q9UBP6 276 aaKnown RBP15.61■□□□□ 0.09
CPSF1-209ENST00000532725 HRH1P35367 487 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 BRWD1-AS2P59051 145 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 SLC35B1P78383 322 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 CX3CL1P78423 397 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 CFHR3Q02985 330 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 MFSD4AQ8N468 514 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 COMMD1Q8N668 190 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 ZBTB34Q8NCN2 500 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 OR52I2Q8NH67 350 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 C15orf40Q8WUR7 153 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 HSD17B10Q99714 261 aaKnown RBP15.6■□□□□ 0.09
CPSF1-209ENST00000532725 SLC5A7Q9GZV3 580 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 KLK11Q9UBX7 282 aa15.6■□□□□ 0.09
CPSF1-209ENST00000532725 TSSC4Q9Y5U2 329 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-209ENST00000532725 CCDC160A6NGH7 325 aa15.59■□□□□ 0.09
CPSF1-209ENST00000532725 SLC25A17O43808 307 aa15.59■□□□□ 0.09
CPSF1-209ENST00000532725 OPN1MWP04001 364 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms