RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CNIH2Q6PI25 160 aa9.91□□□□□ -0.82
SLIRP-209ENST00000557342 SLC35E3Q7Z769 313 aa9.91□□□□□ -0.82
SLIRP-209ENST00000557342 FOXRED2Q8IWF2 684 aa9.91□□□□□ -0.82
SLIRP-209ENST00000557342 OR5AU1Q8NGC0 362 aa9.91□□□□□ -0.82
SLIRP-209ENST00000557342 WIPF2Q8TF74 440 aaPredicted RBP9.91□□□□□ -0.82
SLIRP-209ENST00000557342 AUNIPQ9H7T9 357 aa9.91□□□□□ -0.82
SLIRP-209ENST00000557342 PLSCR3Q9NRY6 295 aa9.91□□□□□ -0.82
SLIRP-209ENST00000557342 RNF150Q9ULK6 438 aa9.91□□□□□ -0.82
SLIRP-209ENST00000557342 IGKV1D-8A0A087WSZ0 117 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 KCNAB3O43448 404 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 SSX5O60225 188 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 IGHG2P01859 326 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 CSF1P09603 554 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 OR8U9P0C7N5 309 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 F2RL1P55085 397 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 ACTBP60709 375 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 MMDQ15546 238 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 TMEM69Q5SWH9 247 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 MZT2AQ6P582 158 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 FAM131AQ6UXB0 335 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 TREML4Q6UXN2 200 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 H1FOOQ8IZA3 346 aaPredicted RBP9.9□□□□□ -0.82
SLIRP-209ENST00000557342 C11orf44Q8N8P7 122 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 OR4X2Q8NGF9 303 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 OR5AN1Q8NGI8 311 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 OR8U1Q8NH10 309 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 CHPT1Q8WUD6 406 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 AP3S1Q92572 193 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 RNF5Q99942 180 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 OR2D2Q9H210 308 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 KIAA1456Q9P272 454 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 COMMD3Q9UBI1 195 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 ANXA10Q9UJ72 324 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 WASHC3Q9Y3C0 194 aa9.9□□□□□ -0.82
SLIRP-209ENST00000557342 H0YJW9 148 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 H7C2Y5 167 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 NBR2O15453 112 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 RBBP9O75884 186 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 APOA1P02647 267 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 APOA2P02652 100 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 CD28P10747 220 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 SOX6P35712 828 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 ARPC4P59998 168 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 TAGLNQ01995 201 aaKnown RBP9.89□□□□□ -0.83
SLIRP-209ENST00000557342 HOGA1Q86XE5 327 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 NDUFA11Q86Y39 141 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 FAM71E2Q8N5Q1 922 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 BEST4Q8NFU0 473 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 NPBQ8NG41 125 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 GON7Q9BXV9 100 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 MMP27Q9H306 513 aa9.89□□□□□ -0.83
SLIRP-209ENST00000557342 PSMB11A5LHX3 300 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 M0R1X1 148 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 AP4M1O00189 453 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 PROP1O75360 226 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 SLC22A5O76082 557 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 OPN1MWP04001 364 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 OPN1MW2P0DN77 364 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 OPN1MW3P0DN78 364 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 ZNF182P17025 639 aaPredicted RBP9.88□□□□□ -0.83
SLIRP-209ENST00000557342 LUMP51884 338 aaPredicted RBP9.88□□□□□ -0.83
SLIRP-209ENST00000557342 TAS2R20P59543 309 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 SLC35B1P78383 322 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 SPCS2Q15005 226 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 CNPY1Q3B7I2 92 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 GLDNQ6ZMI3 551 aaPredicted RBP9.88□□□□□ -0.83
SLIRP-209ENST00000557342 PDPNQ86YL7 162 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 COMMD1Q8N668 190 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 ADTRPQ96IZ2 230 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 IFT46Q9NQC8 304 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 SDHAF2Q9NX18 166 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 OR2W1Q9Y3N9 320 aa9.88□□□□□ -0.83
SLIRP-209ENST00000557342 NDUFA3O95167 84 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 EIF4EP06730 217 aaKnown RBP9.87□□□□□ -0.83
SLIRP-209ENST00000557342 THBS3P49746 956 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 CD83Q01151 205 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 CBX3Q13185 183 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 STPG2Q8N412 459 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 ZNF645Q8N7E2 425 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 GVQW1Q8N7I0 195 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 ZNF383Q8NA42 475 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 DRAXINQ8NBI3 349 aaPredicted RBP9.87□□□□□ -0.83
SLIRP-209ENST00000557342 RITA1Q96K30 269 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 TSNAXQ99598 290 aaKnown RBP9.87□□□□□ -0.83
SLIRP-209ENST00000557342 CITED2Q99967 270 aaPredicted RBP9.87□□□□□ -0.83
SLIRP-209ENST00000557342 NECAP2Q9NVZ3 263 aa9.87□□□□□ -0.83
SLIRP-209ENST00000557342 ZNF107Q9UII5 783 aaPredicted RBP9.87□□□□□ -0.83
SLIRP-209ENST00000557342 TCRBV4S1A1TA0A5B7 111 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 RRHO14718 337 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 HPGDSO60760 199 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 SPDEFO95238 335 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 TSPAN15O95858 294 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 HLA-DRB1P01911 266 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 HLA-DQB1P01920 261 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 RRASP10301 218 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 PTHLHP12272 177 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 NFYAP23511 347 aaPredicted RBP9.86□□□□□ -0.83
SLIRP-209ENST00000557342 CNTFRP26992 372 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 PRSS3P35030 304 aa9.86□□□□□ -0.83
SLIRP-209ENST00000557342 PLGLAQ15195 96 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms