RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 LCN15Q6UWW0 184 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 MRGPRGQ86SM5 289 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 C11orf53Q8IXP5 236 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 OR1L1Q8NH94 360 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 C5orf30Q96GV9 206 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 RBKSQ9H477 322 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 FAM186AA6NE01 2351 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 GRPP07492 148 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 ATP1A1-AS1Q5TC04 95 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 HES3Q5TGS1 186 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 DHRS13Q6UX07 377 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 OR13D1Q8NGV5 346 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 PRR7Q8TB68 274 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 GALMQ96C23 342 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 BCL2L14Q9BZR8 327 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 GSN-AS1Q9NRJ2 163 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 VAX2Q9UIW0 290 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 ESPL1Q14674 2120 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 OOEPA6NGQ2 149 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 ZFP92A6NM28 416 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 IGHG3P01860 377 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 FABP1P07148 127 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 MPV17P39210 176 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 OR3A1P47881 315 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 Q6ZT83 130 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 DEFB123Q8N688 67 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF610Q8N9Z0 462 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 KLF14Q8TD94 323 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-203ENST00000631321 OR51M1Q9H341 326 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 NIT2Q9NQR4 276 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 DOCK7Q96N67 2140 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF891A8MT65 544 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-203ENST00000631321 ATXN7O15265 892 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-203ENST00000631321 MLNRO43193 412 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 IFNA1P01562 189 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 CDX1P47902 265 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-203ENST00000631321 RPL30P62888 115 aaKnown RBP10.72□□□□□ -0.69
LINC00540-203ENST00000631321 ATP6V1FQ16864 119 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 FAM214BQ7L5A3 538 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 TCTEX1D1Q8N7M0 179 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 MRPL37Q9BZE1 423 aaKnown RBP10.72□□□□□ -0.69
LINC00540-203ENST00000631321 OR2D2Q9H210 308 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 SDF2L1Q9HCN8 221 aa10.72□□□□□ -0.69
LINC00540-203ENST00000631321 MUC3AQ02505 3323 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 TGIF2-C20orf24A0A0A6YYL0 155 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.71□□□□□ -0.69
LINC00540-203ENST00000631321 MAP1LC3B2A6NCE7 125 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 RAMP3O60896 148 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 NDUFS6O75380 124 aaKnown RBP10.71□□□□□ -0.69
LINC00540-203ENST00000631321 LYZL6O75951 148 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 CLDN1O95832 211 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 CYB5R3P00387 301 aaPredicted RBP10.71□□□□□ -0.69
LINC00540-203ENST00000631321 IGKV3-15P01624 115 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 HBZP02008 142 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 CEBPDP49716 269 aaPredicted RBP10.71□□□□□ -0.69
LINC00540-203ENST00000631321 TNFSF10P50591 281 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 FGF8P55075 233 aaPredicted RBP10.71□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF674Q2M3X9 581 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 MAP1LC3BQ9GZQ8 125 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 CXXC4Q9H2H0 198 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 TINAGQ9UJW2 476 aa10.71□□□□□ -0.69
LINC00540-203ENST00000631321 LRRC30A6NM36 301 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 IFITM10A6NMD0 228 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 TUBG1P23258 451 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 IL2RGP31785 369 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 BRWD1-AS2P59051 145 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 CATR1Q13166 79 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 NCMAPQ5T1S8 102 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 ACP7Q6ZNF0 438 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 OR52L2PQ8NGH6 319 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 COQ2Q96H96 371 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 AGMATQ9BSE5 352 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 OBP2BQ9NPH6 170 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 TUBG2Q9NRH3 451 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.7□□□□□ -0.7
LINC00540-203ENST00000631321 URGCP-MRPS24S4R325 110 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 COL6A3P12111 3177 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 IGHV3-64DA0A0J9YX35 117 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 UBE2L5PA0A1B0GUS4 154 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 PMS2P5A8MQ11 134 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 WNT9BO14905 357 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 TGOLN2O43493 480 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 COX5AP20674 150 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 RPP25LQ8N5L8 163 aaKnown RBP10.7□□□□□ -0.7
LINC00540-203ENST00000631321 WDR31Q8NA23 367 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 TMEM147Q9BVK8 224 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 DOK5Q9P104 306 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 KNTC1P50748 2209 aa10.7□□□□□ -0.7
LINC00540-203ENST00000631321 ODAMA1E959 279 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 LINC00587B1AMM8 73 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 CLDN34H7C241 214 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 IFNL4K9M1U5 179 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 M0R296 226 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 RAB29O14966 203 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 CLDN14O95500 239 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 IGKV1D-33P01593 117 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 IGKV1-33P01594 117 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 KITLGP21583 273 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 S100PP25815 95 aa10.69□□□□□ -0.7
LINC00540-203ENST00000631321 G6PCP35575 357 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms