RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 TFR2Q9UP52 801 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 FOXJ3Q9UPW0 622 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 PRELID3BQ9Y3B1 194 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 SRRM2Q9UQ35 2752 aaKnown RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 A0A075B6Q4 140 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 LOC100509620A0A075B734 347 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 IGHV1-3A0A0C4DH29 117 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 A0A1B0GW64 132 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 A0A1W2PPW3 197 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 TMEM213A2RRL7 107 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 H3BS24 57 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 CTDSP2O14595 271 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 UBDO15205 165 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RGS16O15492 202 aaPredicted RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RAD51DO75771 328 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 CYP7B1O75881 506 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 MMP23AO75900 390 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 SCGNO76038 276 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RPP14O95059 124 aaKnown RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ANP32DO95626 131 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 FADS2O95864 444 aaKnown RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 TCRBP04435 133 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ETFAP13804 333 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ANXA8P13928 327 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 CCNA2P20248 432 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RRM2P31350 389 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 IFNA8P32881 189 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 FUSP35637 526 aaKnown RBP eCLIP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ECI1P42126 302 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 CRATP43155 626 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 GPR4P46093 362 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 OMPP47874 163 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 CEBPDP49716 269 aaPredicted RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RAB9AP51151 201 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RAB13P51153 203 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 NCBP2P52298 156 aaKnown RBP eCLIP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 PLTPP55058 493 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 FOXL2P58012 376 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RPL27P61353 136 aaKnown RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ACTC1P68032 377 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ACTA1P68133 377 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 LCN2P80188 198 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 PSG4Q00888 419 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 DUSP2Q05923 314 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 DAZ2Q13117 558 aaKnown RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 TOP3AQ13472 1001 aaPredicted RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 MADCAM1Q13477 382 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 TPBGQ13641 420 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RAB39AQ14964 217 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 CDK10Q15131 360 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 USF2Q15853 346 aaPredicted RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 C5orf64Q2M2E5 130 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 SGO1Q5FBB7 561 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 CLLU1Q5K131 121 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 DDI2Q5TDH0 399 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 C10orf107Q8IVU9 208 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 PROKR2Q8NFJ6 384 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 OR2D3Q8NGH3 330 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 OR5AN1Q8NGI8 311 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ZFAND1Q8TCF1 268 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 S100ZQ8WXG8 99 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ATP6V1E2Q96A05 226 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 MCUR1Q96AQ8 359 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RCN3Q96D15 328 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 RRNAD1Q96FB5 475 aaKnown RBP1.04□□□□□ -2.24
LINC00643-201ENST00000334389 KCTD7Q96MP8 289 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ZNF714Q96N38 554 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 MED20Q9H944 212 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ZNF556Q9HAH1 456 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 MID1IP1Q9NPA3 183 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 NKIRAS1Q9NYS0 192 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 TAS2R5Q9NYW4 299 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 MED11Q9P086 117 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 FBXL17Q9UF56 701 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 KCNE5Q9UJ90 142 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 ETV7Q9Y603 341 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 TMEM14AQ9Y6G1 99 aa1.04□□□□□ -2.24
LINC00643-201ENST00000334389 INTS1Q8N201 2190 aaKnown RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 DIDO1Q9BTC0 2240 aaKnown RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 RNF103-CHMP3A0A140T963 221 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 BHLHE40O14503 412 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 ACOT8O14734 319 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 ITM2AO43736 263 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 KHDRBS3O75525 346 aaKnown RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 GABARAPO95166 117 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 HMGN2P05204 90 aaKnown RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 CD14P08571 375 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 UBBP0CG47 229 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 UBCP0CG48 685 aaKnown RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 CLUP10909 449 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 GBX2P52951 348 aaPredicted RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 CRYBA2P53672 197 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 MFAP2P55001 183 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 WNT4P56705 351 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 OR12D2P58182 307 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 GNG2P59768 71 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 MAGOHP61326 146 aaKnown RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 CDK6Q00534 326 aa1.03□□□□□ -2.24
LINC00643-201ENST00000334389 SSBP1Q04837 148 aaKnown RBP1.03□□□□□ -2.24
LINC00643-201ENST00000334389 SLC34A1Q06495 639 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms