RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PSMB9P28065 219 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 PPP1CCP36873 323 aaKnown RBP11.78□□□□□ -0.52
SS18-212ENST00000579061 GNMTQ14749 295 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 C9orf152Q5JTZ5 239 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 HES5Q5TA89 166 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 ZNF773Q6PK81 442 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 Q6ZPA2 131 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 LYG1Q8N1E2 194 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 OR8H1Q8NGG4 311 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 PECRQ9BY49 303 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 AK3Q9UIJ7 227 aa11.78□□□□□ -0.52
SS18-212ENST00000579061 RRP15Q9Y3B9 282 aaKnown RBP11.78□□□□□ -0.52
SS18-212ENST00000579061 IGHV3-72A0A0B4J1Y9 119 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 SH2D7A6NKC9 451 aaPredicted RBP11.77□□□□□ -0.53
SS18-212ENST00000579061 ITGB1BP1O14713 200 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 MOSP00540 346 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 IGHG2P01859 326 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 RAB6AP20340 208 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 OR10A3P58181 314 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 NSUN5P1Q3KNT7 163 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 C22orf42Q6IC83 251 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 C5orf24Q7Z6I8 188 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 ODF3L1Q8IXM7 274 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 OR2AK2Q8NG84 335 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 OR4F17Q8NGA8 305 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 OR4X2Q8NGF9 303 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 PTX4Q96A99 478 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 ARHGAP5-AS1Q96IT6 56 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 OR4F4Q96R69 305 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 GHITMQ9H3K2 345 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 C12orf4Q9NQ89 552 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 LIN7CQ9NUP9 197 aaKnown RBP11.77□□□□□ -0.53
SS18-212ENST00000579061 STUB1Q9UNE7 303 aa11.77□□□□□ -0.53
SS18-212ENST00000579061 HLA-DRB3P79483 266 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 LSAMPQ13449 338 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 KCTD21Q4G0X4 260 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 HIST2H2BDQ6DRA6 164 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 FAM71F2Q6NXP2 309 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 TPRA1Q86W33 373 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 Q8N9W7 124 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 SETD6Q8TBK2 473 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 CHPT1Q8WUD6 406 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 IL1F10Q8WWZ1 152 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 CMSS1Q9BQ75 279 aaKnown RBP11.76□□□□□ -0.53
SS18-212ENST00000579061 Q9N2K0 584 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 TXNL4BQ9NX01 149 aaKnown RBP11.76□□□□□ -0.53
SS18-212ENST00000579061 PIPOXQ9P0Z9 390 aa11.76□□□□□ -0.53
SS18-212ENST00000579061 NCBP2LA6PVI3 153 aaKnown RBP11.75□□□□□ -0.53
SS18-212ENST00000579061 GADD45AP24522 165 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 DEFA6Q01524 100 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 TCTEX1D4Q5JR98 221 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 PLAC9Q5JTB6 97 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 ZNF833PQ6ZTB9 187 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 SLC35E3Q7Z769 313 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 EDARADDQ8WWZ3 215 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 R3HDM4Q96D70 268 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 RAB3CQ96E17 227 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 S1PR3Q99500 378 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 NABP2Q9BQ15 211 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 HDHD3Q9BSH5 251 aaPredicted RBP11.75□□□□□ -0.53
SS18-212ENST00000579061 ABCG5Q9H222 651 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 PLSCR3Q9NRY6 295 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 SLC23A1Q9UHI7 598 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 SSR3Q9UNL2 185 aa11.75□□□□□ -0.53
SS18-212ENST00000579061 TSSC4Q9Y5U2 329 aaPredicted RBP11.75□□□□□ -0.53
SS18-212ENST00000579061 NOTCH3Q9UM47 2321 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 TCRBV4S1A1TA0A5B7 111 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 PSMB11A5LHX3 300 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 METTL21EPA6NDL7 271 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 NOTOA8MTQ0 251 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 ZNF736B4DX44 427 aaPredicted RBP11.74□□□□□ -0.53
SS18-212ENST00000579061 RAB27BO00194 218 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 RAB29O14966 203 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 KCNAB3O43448 404 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 ZBTB25P24278 435 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 MRPS15P82914 257 aaKnown RBP11.74□□□□□ -0.53
SS18-212ENST00000579061 PLA2G7Q13093 441 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 NR2C2APQ86WQ0 139 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 FOXRED2Q8IWF2 684 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 COMMD1Q8N668 190 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 OR10R2Q8NGX6 335 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 IFI27L2Q9H2X8 130 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 KCNK7Q9Y2U2 307 aa11.74□□□□□ -0.53
SS18-212ENST00000579061 SAA2-SAA4A0A096LPE2 208 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 SERPINE3A8MV23 424 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 AP4M1O00189 453 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 WIPF1O43516 503 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 CD3GP09693 182 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 SAA2P0DJI9 122 aaPredicted RBP11.73□□□□□ -0.53
SS18-212ENST00000579061 ARL6IP1Q15041 203 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 FAM71E2Q8N5Q1 922 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 RASL11BQ9BPW5 248 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 MRPL20Q9BYC9 149 aaKnown RBP11.73□□□□□ -0.53
SS18-212ENST00000579061 TOLLIPQ9H0E2 274 aa11.73□□□□□ -0.53
SS18-212ENST00000579061 TRDCB7Z8K6 153 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 MFNGO00587 321 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 ST8SIA5O15466 376 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 HSPA12AO43301 675 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 DIRAS3O95661 229 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 SCTP09683 121 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms