RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 IGFBP3P17936 291 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-202ENST00000527827 STEAP3Q658P3 488 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 ZNF429Q86V71 674 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 GAPTQ8N292 157 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 APH1BQ8WW43 257 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 DCUN1D4Q92564 292 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 ZNF184Q99676 751 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-202ENST00000527827 OR51J1Q9H342 316 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 ISYNA1Q9NPH2 558 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 RPL36Q9Y3U8 105 aaKnown RBP18.28■□□□□ 0.52
CPSF1-202ENST00000527827 SACSQ9NZJ4 4579 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 MAGEA13PA6NCF6 341 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 FAM90A10PA6NDY2 464 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 MCRIP1C9JLW8 97 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 RCC1P18754 421 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-202ENST00000527827 CNTFRP26992 372 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 ADARB1P78563 741 aaKnown RBP18.27■□□□□ 0.52
CPSF1-202ENST00000527827 C6orf183Q5T699 404 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 FAM27D1Q5T7N8 215 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 PRR18Q8N4B5 295 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 OR13C5Q8NGS8 318 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 SPACA1Q9HBV2 294 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 RAB9BQ9NP90 201 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 FGF20Q9NP95 211 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-202ENST00000527827 ETAA1Q9NY74 926 aa18.27■□□□□ 0.52
CPSF1-202ENST00000527827 IGHV7-81A0A0B4J1V7 117 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 HLA-DRB1P01911 266 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 ETV1P50549 477 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 RAB9AP51151 201 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 ACTBP60709 375 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 RIPK1Q13546 671 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 MORN2Q502X0 79 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 OR2G6Q5TZ20 316 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 OVCH2Q7RTZ1 564 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 CYYR1Q96J86 154 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 PARP11Q9NR21 331 aa18.26■□□□□ 0.51
CPSF1-202ENST00000527827 OVOL1O14753 267 aa18.25■□□□□ 0.51
CPSF1-202ENST00000527827 GPR176Q14439 515 aa18.25■□□□□ 0.51
CPSF1-202ENST00000527827 RAB12Q6IQ22 244 aa18.25■□□□□ 0.51
CPSF1-202ENST00000527827 ODF3L1Q8IXM7 274 aa18.25■□□□□ 0.51
CPSF1-202ENST00000527827 ANKRD60Q9BZ19 345 aa18.25■□□□□ 0.51
CPSF1-202ENST00000527827 ALX4Q9H161 411 aaPredicted RBP18.25■□□□□ 0.51
CPSF1-202ENST00000527827 TRAV41A0A0B4J266 112 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 TRBV5-5A0A0J9YX44 114 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 OGG1O15527 345 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 GPX5O75715 221 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 FRMD6-AS1P0C7T7 363 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 SPNP16150 400 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 BLVRBP30043 206 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-202ENST00000527827 GNMTQ14749 295 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 TRAT1Q6PIZ9 186 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 C5orf24Q7Z6I8 188 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 MINDY2Q8NBR6 621 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 DLX4Q92988 240 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-202ENST00000527827 SMIM19Q96E16 107 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 SLC29A1Q99808 456 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 NABP2Q9BQ15 211 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 MRPL20Q9BYC9 149 aaKnown RBP18.24■□□□□ 0.51
CPSF1-202ENST00000527827 TAF9BQ9HBM6 251 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 OR2S2Q9NQN1 319 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 GAR1Q9NY12 217 aaKnown RBP18.24■□□□□ 0.51
CPSF1-202ENST00000527827 PEX16Q9Y5Y5 336 aa18.24■□□□□ 0.51
CPSF1-202ENST00000527827 TRAV8-7A0A075B6U6 113 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 LOC100130705A0A1B0GUX0 176 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 NBR2O15453 112 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 SAP30O75446 220 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 SC5DO75845 299 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 LALBAP00709 142 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 SMN1Q16637 294 aaKnown RBP18.23■□□□□ 0.51
CPSF1-202ENST00000527827 C5orf64Q2M2E5 130 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 GLIPR1L1Q6UWM5 242 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 OR52L2PQ8NGH6 319 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 MUL1Q969V5 352 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 MRPS24Q96EL2 167 aaKnown RBP18.23■□□□□ 0.51
CPSF1-202ENST00000527827 ZNF251Q9BRH9 671 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 FAM53CQ9NYF3 392 aa18.23■□□□□ 0.51
CPSF1-202ENST00000527827 MRPS28Q9Y2Q9 187 aaKnown RBP18.23■□□□□ 0.51
CPSF1-202ENST00000527827 SLURP1P55000 103 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 C19orf54Q5BKX5 351 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 NPBQ8NG41 125 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 ABHD14AQ9BUJ0 271 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 BANF2Q9H503 90 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 TPSG1Q9NRR2 321 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 MBNL3Q9NUK0 354 aaKnown RBP18.22■□□□□ 0.51
CPSF1-202ENST00000527827 BABAM2Q9NXR7 383 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 FBXO7Q9Y3I1 522 aa18.22■□□□□ 0.51
CPSF1-202ENST00000527827 SOX15O60248 233 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 CA11O75493 328 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 WBP4O75554 376 aaKnown RBP18.21■□□□□ 0.51
CPSF1-202ENST00000527827 LYL1P12980 280 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 GP9P14770 177 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 PPP1CCP36873 323 aaKnown RBP18.21■□□□□ 0.51
CPSF1-202ENST00000527827 RPS11P62280 158 aaKnown RBP eCLIP18.21■□□□□ 0.51
CPSF1-202ENST00000527827 NDPQ00604 133 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 SIGIRRQ6IA17 410 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 LIN54Q6MZP7 749 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 TMPRSS11AQ6ZMR5 421 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 GHSRQ92847 366 aa18.21■□□□□ 0.51
CPSF1-202ENST00000527827 CHCHD3Q9NX63 227 aaKnown RBP18.21■□□□□ 0.51
CPSF1-202ENST00000527827 UBE2QL1A1L167 161 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms