RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 FAM19A3Q7Z5A8 133 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 OR11H1Q8NG94 326 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 OR2AE1Q8NHA4 323 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 FAM45AQ8TCE6 357 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 PRSS27Q9BQR3 290 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 HSPB9Q9BQS6 159 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 SPZ1Q9BXG8 430 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 CDCA4Q9BXL8 241 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 GOLPH3Q9H4A6 298 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 C11orf49Q9H6J7 331 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 BABAM2Q9NXR7 383 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 RPL26L1Q9UNX3 145 aaKnown RBP0.7□□□□□ -2.3
VPS50-217ENST00000485140 MTCH2Q9Y6C9 303 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 MED13Q9UHV7 2174 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 TMEM235A6NFC5 223 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 SOD1P00441 154 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 CTSEP14091 401 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 CCNOP22674 350 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 ATP6V0CP27449 155 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 MAGEA12P43365 314 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 RELAQ04206 551 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 CD164Q04900 197 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 BSPH1Q075Z2 132 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 UAP1Q16222 522 aaPredicted RBP0.69□□□□□ -2.3
VPS50-217ENST00000485140 MRPL51Q4U2R6 128 aaKnown RBP0.69□□□□□ -2.3
VPS50-217ENST00000485140 HENMT1Q5T8I9 393 aaKnown RBP0.69□□□□□ -2.3
VPS50-217ENST00000485140 EBLN2Q6P2I7 272 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 AGTRAPQ6RW13 159 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 ZNF283Q8N7M2 679 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 PGLYRP3Q96LB9 341 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 CATSPER2Q96P56 530 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 PECRQ9BY49 303 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 FBXL15Q9H469 300 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 LAMB2P55268 1798 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 RGS12O14924 1447 aa0.69□□□□□ -2.3
VPS50-217ENST00000485140 MYO5BQ9ULV0 1848 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 NCKAP5O14513 1909 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 RAB19A4D1S5 217 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 C2orf74A8MZ97 194 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 CDIPTO14735 213 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 LY6HO94772 140 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 ACTR1BP42025 376 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 ERHP84090 104 aaKnown RBP0.68□□□□□ -2.3
VPS50-217ENST00000485140 XRCC4Q13426 336 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 BSXQ3C1V8 233 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 LGALS9CQ6DKI2 356 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 RASL11AQ6T310 242 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 Q6ZTI0 123 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 GLT6D1Q7Z4J2 308 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 MRPL52Q86TS9 123 aaKnown RBP0.68□□□□□ -2.3
VPS50-217ENST00000485140 SLC35F6Q8N357 371 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 OR5D18Q8NGL1 313 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 RNF133Q8WVZ7 376 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 MRAP2Q96G30 205 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 BCL7BQ9BQE9 202 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 MED18Q9BUE0 208 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 C1QTNF6Q9BXI9 259 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 METTL17Q9H7H0 456 aaPredicted RBP0.68□□□□□ -2.3
VPS50-217ENST00000485140 DMAC2Q9NW81 257 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 COMMD9Q9P000 198 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 TMEM216Q9P0N5 145 aa0.68□□□□□ -2.3
VPS50-217ENST00000485140 DENND4BO75064 1496 aaPredicted RBP0.67□□□□□ -2.3
VPS50-217ENST00000485140 NYNRINQ9P2P1 1898 aaKnown RBP0.67□□□□□ -2.3
VPS50-217ENST00000485140 LINC00862A6NCI5 91 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 SHOX2O60902 331 aaPredicted RBP0.67□□□□□ -2.3
VPS50-217ENST00000485140 CDK14O94921 469 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 LYNX1P0DP58 116 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 GADD45AP24522 165 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 PEBP1P30086 187 aaKnown RBP0.67□□□□□ -2.3
VPS50-217ENST00000485140 RAP1GDS1P52306 607 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 ATP5J2P56134 94 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 DEFA6Q01524 100 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 ZNF90Q03938 601 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 HSP90B2PQ58FF3 399 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 FAM201AQ5SY85 155 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 HES3Q5TGS1 186 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 Q6ZT83 130 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 COA5Q86WW8 74 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 OR11L1Q8NGX0 322 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 OR5K1Q8NHB7 308 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 UPK3BQ9BT76 320 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 IFT46Q9NQC8 304 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 TAS2R13Q9NYV9 303 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 SNX12Q9UMY4 172 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 KDM5BQ9UGL1 1544 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 TNIKQ9UKE5 1360 aa0.67□□□□□ -2.3
VPS50-217ENST00000485140 SDK1Q7Z5N4 2213 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 ABCB11O95342 1321 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 ATAD5Q96QE3 1844 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 ARHGAP32A7KAX9 2087 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 C8orf87E5RJ46 101 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 H0YC42 278 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 J3QLI3 93 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 GNRH2O43555 120 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 STK16O75716 305 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 SNAP29O95721 258 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 EPPINO95925 133 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 CSTAP01040 98 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 ESDP10768 282 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 IL9P15248 144 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms