RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HIST1H2BAQ96A08 127 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 TMEM56Q96MV1 263 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 OR8B2Q96RD0 313 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 MED10Q9BTT4 135 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 ASCL3Q9NQ33 180 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 DMAC2Q9NW81 257 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 ATAD5Q96QE3 1844 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 TRPM3Q9HCF6 1732 aaPredicted RBP1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 LRPPRCP42704 1394 aaKnown RBP1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 CACNA1SQ13698 1873 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 MAP3K19Q56UN5 1328 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 LINC00854A0A1B0GVQ3 168 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 TRPC5OSA6NMA1 111 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 J3QLI3 93 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 PHYHO14832 338 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 CDK14O94921 469 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 RD3LP0DJH9 198 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 OR12D1P0DN82 309 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 KDELR2P33947 212 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 FUSP35637 526 aaKnown RBP eCLIP1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 PSMD7P51665 324 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 PMS2P3Q13401 168 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 CST6Q15828 149 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 NIPAL1Q6NVV3 410 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 NOXRED1Q6NXP6 359 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 VN1R4Q7Z5H5 301 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 BOD1L2Q8IYS8 172 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 OR4P4Q8NGL7 312 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 OR10D4PQ8NGN7 298 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 PPWD1Q96BP3 646 aaKnown RBP1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 BBS2Q9BXC9 721 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 BCL2L14Q9BZR8 327 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 SLC19A3Q9BZV2 496 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 ZNF286AQ9HBT8 521 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 MRPL16Q9NX20 251 aaKnown RBP1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 OR51B4Q9Y5P0 310 aa1.25□□□□□ -2.21
CCDC88A-212ENST00000474059 COL18A1P39060 1754 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 C9J4A7 227 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 KLRC4-KLRK1H3BQV0 150 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 J3QRE1 110 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 K7EQS6 105 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 SYNGR1O43759 233 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 SLC25A20O43772 301 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 ZNF73O43830 326 aaPredicted RBP1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 SCN2BO60939 215 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 RAB36O95755 333 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CTSEP14091 401 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CD99P14209 185 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CRABP1P29762 137 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 GABRA3P34903 492 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 DLX6P56179 175 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 RAB8AP61006 207 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 FAM3AP98173 230 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 TSPAN31Q12999 210 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 ZNHIT3Q15649 155 aaPredicted RBP1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 HENMT1Q5T8I9 393 aaKnown RBP1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 XKRXQ6PP77 449 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 TCF24Q7RTU0 167 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 MTERF4Q7Z6M4 381 aaKnown RBP1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CRLF3Q8IUI8 442 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 C2orf73Q8N5S3 287 aaPredicted RBP1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 OR5AK3PQ8NH89 298 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 ANGPTL6Q8NI99 470 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 SUN5Q8TC36 379 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CD200R1Q8TD46 325 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CCDC12Q8WUD4 166 aaPredicted RBP1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 TAMM41Q96BW9 452 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 GALMQ96C23 342 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 UGT2B28Q9BY64 529 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CHST5Q9GZS9 411 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 C11orf49Q9H6J7 331 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 NRBP2Q9NSY0 501 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 SAMHD1Q9Y3Z3 626 aaKnown RBP1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 MTCH2Q9Y6C9 303 aa1.24□□□□□ -2.21
CCDC88A-212ENST00000474059 CRB1P82279 1406 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 B4DEV8 164 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 F5H5K5 113 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 G3V3Q6 166 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 CYTH3O43739 400 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 PVALBP20472 110 aaPredicted RBP1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 PSMA1P25786 263 aaKnown RBP1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 SULT1A2P50226 295 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 STC1P52823 247 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 GABARAPL2P60520 117 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 GTF2BQ00403 316 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 DEFA6Q01524 100 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 OR8G1Q15617 311 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 CENPWQ5EE01 88 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 EBLN2Q6P2I7 272 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 TTC33Q6PID6 262 aaPredicted RBP1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 SPNS3Q6ZMD2 512 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 ZFAND2AQ8N6M9 145 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 YIPF7Q8N8F6 280 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 ATP6V1C2Q8NEY4 427 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 OR8K1Q8NGG5 319 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 MFSD8Q8NHS3 518 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 LRRC45Q96CN5 670 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 ATP6V1G3Q96LB4 118 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 C20orf166-AS1Q96NR2 134 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 CHMP4BQ9H444 224 aaKnown RBP1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms